Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G7082_RS07675 Genome accession   NZ_CP049887
Coordinates   1525137..1526507 (+) Length   456 a.a.
NCBI ID   WP_166034527.1    Uniprot ID   A0A6G8ATS4
Organism   Vagococcus hydrophili strain HDW17B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1520137..1531507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7082_RS07660 (G7082_07660) proB 1520938..1521762 (-) 825 WP_166034525.1 glutamate 5-kinase -
  G7082_RS07665 (G7082_07665) - 1522160..1524127 (+) 1968 WP_166036043.1 KUP/HAK/KT family potassium transporter -
  G7082_RS07670 (G7082_07670) - 1524480..1525007 (+) 528 WP_166034526.1 dUTP diphosphatase -
  G7082_RS07675 (G7082_07675) radA 1525137..1526507 (+) 1371 WP_166034527.1 DNA repair protein RadA Machinery gene
  G7082_RS07680 (G7082_07680) - 1526526..1527641 (+) 1116 WP_166034528.1 PIN/TRAM domain-containing protein -
  G7082_RS07685 (G7082_07685) gltX 1527734..1529197 (+) 1464 WP_166034529.1 glutamate--tRNA ligase -
  G7082_RS07690 (G7082_07690) cysS 1529463..1530872 (+) 1410 WP_166036044.1 cysteine--tRNA ligase -
  G7082_RS07695 (G7082_07695) - 1530872..1531279 (+) 408 WP_166034530.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50419.94 Da        Isoelectric Point: 7.9860

>NTDB_id=428383 G7082_RS07675 WP_166034527.1 1525137..1526507(+) (radA) [Vagococcus hydrophili strain HDW17B]
MAKKKKNEFVCQECGYVSPKYLGRCPNCGNWNSLVEEIIQEKPTRHSRVSLSGTTTKPERLDEVVFQKEQRVKTELEELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQQLSKLDDNVLYVSGEESAQQIKMRGERLSATDNHFYVYGETDMGLIRQ
TIEHLKPNYVVIDSIQTMIHPEITSAAGSVSQVRETTAELMQIAKTNQITIFIVGHVTKEGSLAGPRMLEHMVDTVLYFE
GERHHTFRILRAVKNRFGSTNEIGIFEMKQEGLVEVRNPSEAFLEERLADATGSAIVCSMEGTRPILAEVQALITPSVFG
NAQRTAAGLDRHRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYKDKGTSPYECFIGEIGLTG
EVRRVNRIDQRVSEAKKLGFKKIYVPKNNLQGWKAPKGIEIIGVSTVSETLRQVFK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=428383 G7082_RS07675 WP_166034527.1 1525137..1526507(+) (radA) [Vagococcus hydrophili strain HDW17B]
GTGGCGAAGAAAAAGAAAAATGAATTTGTCTGCCAAGAATGTGGTTATGTTTCGCCAAAATATTTAGGGCGTTGTCCTAA
CTGTGGCAATTGGAACTCATTAGTAGAGGAAATAATTCAAGAAAAACCAACGCGTCATAGTCGAGTGAGTTTATCTGGAA
CAACAACTAAACCTGAGCGATTGGATGAGGTTGTTTTTCAAAAAGAGCAACGAGTAAAGACTGAATTAGAAGAATTAAAC
CGTGTTTTAGGTGGCGGTGTTGTCCCTGGTTCAATGGTTTTAATCGGTGGTGATCCTGGAATTGGTAAATCAACACTATT
ACTACAAGTTTCTCAACAACTTAGTAAATTAGATGATAATGTTCTGTATGTGTCAGGTGAAGAAAGTGCCCAACAGATTA
AAATGCGCGGGGAACGTTTAAGTGCCACAGACAATCACTTTTATGTGTACGGGGAAACGGATATGGGATTGATTAGACAA
ACAATTGAGCATCTGAAACCGAATTATGTGGTGATTGACTCGATTCAAACCATGATTCACCCAGAAATTACCAGTGCGGC
AGGTAGTGTGAGCCAAGTTAGAGAAACAACGGCTGAGTTGATGCAAATTGCGAAAACCAATCAAATTACGATTTTTATTG
TCGGGCATGTGACTAAAGAAGGTTCTTTAGCTGGTCCAAGAATGTTGGAGCACATGGTAGACACAGTTCTTTATTTTGAA
GGAGAGAGACATCACACCTTTAGAATTTTAAGAGCGGTTAAAAATCGTTTTGGCTCAACGAATGAAATCGGTATCTTTGA
GATGAAACAAGAAGGATTAGTTGAAGTTAGAAACCCTTCCGAAGCTTTTTTAGAAGAGCGACTAGCTGATGCGACAGGTT
CTGCCATTGTTTGTTCTATGGAAGGGACGCGCCCGATTTTAGCAGAAGTTCAAGCGCTGATTACACCGTCCGTTTTTGGA
AATGCCCAACGAACAGCAGCTGGTTTAGATCGCCATCGTGTTTCCTTAATCATGGCAGTCTTAGAAAAAAGAGCAGGCTT
AATGTTACAAAATCAAGATGCTTATTTGAAAGCTGCAGGTGGCGTGAAATTAGATGAGCCGGCCATTGATTTAGCGATTG
CGGTTAGTATTGCTTCAAGTTACAAAGATAAAGGAACTTCACCTTATGAATGCTTTATTGGTGAGATTGGTTTGACAGGT
GAAGTCAGACGAGTGAATCGAATTGATCAGCGTGTATCAGAAGCTAAAAAACTTGGCTTTAAAAAAATATATGTTCCTAA
GAATAATTTGCAAGGTTGGAAAGCACCAAAAGGAATCGAAATTATTGGTGTATCCACTGTTTCAGAAACGTTAAGGCAAG
TGTTCAAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8ATS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

72.747

99.781

0.726
  radA Streptococcus pneumoniae D39

72.747

99.781

0.726
  radA Streptococcus pneumoniae R6

72.747

99.781

0.726
  radA Streptococcus pneumoniae TIGR4

72.747

99.781

0.726
  radA Streptococcus mitis NCTC 12261

72.747

99.781

0.726
  radA Streptococcus mitis SK321

72.527

99.781

0.724
  radA Bacillus subtilis subsp. subtilis str. 168

66.741

98.904

0.66