Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   G7082_RS02795 Genome accession   NZ_CP049887
Coordinates   595381..597057 (-) Length   558 a.a.
NCBI ID   WP_166033701.1    Uniprot ID   A0A6G8ARB1
Organism   Vagococcus hydrophili strain HDW17B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 590381..602057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7082_RS02765 (G7082_02765) - 590532..592421 (-) 1890 WP_166033686.1 penicillin-binding transpeptidase domain-containing protein -
  G7082_RS02770 (G7082_02770) - 592421..592807 (-) 387 WP_166033689.1 hypothetical protein -
  G7082_RS02775 (G7082_02775) rsmH 592810..593775 (-) 966 WP_166033691.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  G7082_RS02780 (G7082_02780) mraZ 593800..594231 (-) 432 WP_166033693.1 division/cell wall cluster transcriptional repressor MraZ -
  G7082_RS02785 (G7082_02785) - 594393..594764 (-) 372 WP_166033695.1 DUF3397 domain-containing protein -
  G7082_RS02790 (G7082_02790) - 595073..595192 (+) 120 WP_166033699.1 DUF4044 domain-containing protein -
  G7082_RS02795 (G7082_02795) recN 595381..597057 (-) 1677 WP_166033701.1 DNA repair protein RecN Machinery gene
  G7082_RS02800 (G7082_02800) - 597072..597518 (-) 447 WP_166033703.1 arginine repressor -
  G7082_RS02805 (G7082_02805) - 597542..598366 (-) 825 WP_166033705.1 TlyA family RNA methyltransferase -
  G7082_RS02810 (G7082_02810) - 598366..599262 (-) 897 WP_166033707.1 polyprenyl synthetase family protein -
  G7082_RS02815 (G7082_02815) - 599265..599495 (-) 231 WP_166033709.1 exodeoxyribonuclease VII small subunit -
  G7082_RS02820 (G7082_02820) xseA 599500..600840 (-) 1341 WP_166033711.1 exodeoxyribonuclease VII large subunit -
  G7082_RS02825 (G7082_02825) folD 600858..601700 (-) 843 WP_166033713.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 63288.65 Da        Isoelectric Point: 4.4003

>NTDB_id=428372 G7082_RS02795 WP_166033701.1 595381..597057(-) (recN) [Vagococcus hydrophili strain HDW17B]
MIQELSVQDFAIISNLNIEFKEGMTVLTGETGAGKSIIIDAMGLIVGGRGSSDFIRDGAEKCRIEGSFYVESNQEMDRYL
ADCGIEMVDDVLVVQREIYRTGRNNCRINGQLVNTKTLRGMGQYLVDIHGQNEHQELMEATHHLGLLDQFDVDRLTPVLA
DYRIHYTKFKELEMNLKKFHANEKEYVQRMDMLQFQFEEINEAELLPNEEEQLLEERKKLVSFQQITDGLKNTYNAINGD
ESQALDLVAQAMNEMSSIEDLDPSYKETSELIQTSYYSLQEALTNVSAFVDDLELDESRLLEVESRLDVIRQLKRKYGET
VEKILEHFEYIKEELSLSEFGGLDVEQVERDLESEKELVDSLGRELSQCRKETAGNLEENILTELKSLFMENTRFKVMFT
ELDKPNETGLDKVEFFISTNLGEDLKPLVKVASGGELSRVMLAIKTIFSKNHGMTSIVFDEVDTGVSGRVAQAIAEKIHQ
IGTNSQVLCITHLPQVAAIADTQYFIKKEIINKRTETSVSELAATERVDEVARMLSGAEITPLTLEHAKELLSIAQKK

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=428372 G7082_RS02795 WP_166033701.1 595381..597057(-) (recN) [Vagococcus hydrophili strain HDW17B]
ATGATACAAGAATTATCTGTCCAAGATTTTGCGATTATTTCTAATTTGAATATTGAATTTAAAGAAGGTATGACAGTTCT
GACTGGTGAAACAGGTGCGGGTAAATCGATTATTATTGATGCGATGGGTTTGATTGTTGGCGGGCGTGGTTCCAGTGATT
TTATTCGAGATGGGGCAGAAAAATGTCGCATTGAAGGGTCTTTTTATGTTGAAAGTAATCAAGAGATGGATCGTTATTTA
GCAGATTGTGGCATTGAGATGGTTGATGATGTCTTGGTTGTTCAACGAGAAATTTACCGAACCGGGAGAAATAACTGTCG
CATTAATGGCCAGTTGGTTAATACGAAAACCTTAAGAGGGATGGGACAATATTTGGTTGATATTCATGGTCAAAACGAGC
ATCAAGAATTAATGGAAGCGACTCATCATTTAGGGTTGTTGGATCAGTTTGATGTGGATCGTTTGACGCCTGTATTAGCT
GATTATCGGATACATTATACTAAATTCAAAGAATTAGAAATGAACCTTAAGAAATTTCATGCTAATGAAAAAGAATATGT
TCAACGAATGGACATGTTGCAATTTCAATTTGAAGAGATTAATGAAGCGGAACTTTTACCTAATGAGGAAGAGCAACTTC
TAGAGGAACGAAAAAAACTAGTTAGTTTTCAACAAATTACAGACGGTTTAAAAAATACGTATAATGCTATCAATGGTGAT
GAAAGTCAGGCGTTGGATTTAGTTGCTCAGGCAATGAATGAGATGAGTAGCATTGAAGATTTAGATCCATCTTATAAAGA
AACAAGTGAGTTGATTCAAACAAGTTACTACTCCTTACAAGAAGCTCTAACAAATGTTTCGGCATTTGTGGATGATTTGG
AATTGGATGAATCTCGTTTGCTCGAAGTTGAAAGCAGGCTAGATGTCATTCGTCAGTTGAAAAGAAAATACGGTGAGACT
GTTGAAAAAATATTAGAGCATTTTGAGTATATTAAAGAAGAACTATCTCTTTCAGAATTTGGTGGCTTAGATGTTGAACA
GGTAGAACGGGATTTGGAATCTGAAAAAGAATTGGTTGATTCTTTAGGTCGAGAGCTAAGTCAATGCCGAAAAGAAACAG
CTGGAAACTTAGAAGAAAATATCTTAACAGAATTAAAAAGCTTATTCATGGAAAACACTCGCTTTAAAGTAATGTTTACT
GAGTTAGATAAACCGAATGAAACAGGCTTAGATAAAGTTGAATTTTTCATTTCTACCAATTTAGGGGAAGATTTGAAACC
TTTAGTTAAAGTGGCTTCTGGCGGTGAGTTATCTCGTGTGATGTTAGCGATAAAAACAATTTTTTCGAAAAATCACGGTA
TGACAAGTATTGTATTTGATGAAGTGGACACTGGTGTAAGTGGTCGAGTGGCTCAAGCAATTGCAGAGAAAATCCATCAA
ATTGGAACGAACTCTCAAGTACTATGTATCACTCATTTGCCTCAAGTGGCAGCGATTGCTGATACTCAGTATTTTATCAA
AAAGGAAATAATAAATAAGCGAACAGAAACAAGTGTTAGTGAATTGGCAGCGACCGAGCGAGTGGATGAAGTTGCTAGAA
TGTTGTCGGGAGCAGAAATCACGCCGCTGACATTGGAGCATGCGAAAGAATTATTGTCGATTGCACAGAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8ARB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.834

100

0.495