Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G7081_RS02895 Genome accession   NZ_CP049886
Coordinates   557788..558735 (+) Length   315 a.a.
NCBI ID   WP_166007232.1    Uniprot ID   A0A6G8AM01
Organism   Vagococcus coleopterorum strain HDW17A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552788..563735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7081_RS02870 (G7081_02870) - 553915..554346 (+) 432 WP_166007222.1 hypothetical protein -
  G7081_RS02875 (G7081_02875) - 554395..555129 (+) 735 WP_166007224.1 16S rRNA pseudouridine(516) synthase -
  G7081_RS02880 (G7081_02880) udk 555283..555912 (+) 630 WP_166007226.1 uridine kinase -
  G7081_RS02885 (G7081_02885) dinB 555994..557109 (+) 1116 WP_166007228.1 DNA polymerase IV -
  G7081_RS02890 (G7081_02890) - 557130..557597 (-) 468 WP_166007230.1 YueI family protein -
  G7081_RS02895 (G7081_02895) ceuB 557788..558735 (+) 948 WP_166007232.1 ABC transporter permease Machinery gene
  G7081_RS02900 (G7081_02900) - 558732..559700 (+) 969 WP_166007234.1 iron chelate uptake ABC transporter family permease subunit -
  G7081_RS02905 (G7081_02905) - 559701..560462 (+) 762 WP_166007236.1 ABC transporter ATP-binding protein -
  G7081_RS02910 (G7081_02910) - 560517..561455 (+) 939 WP_166007238.1 siderophore ABC transporter substrate-binding protein -
  G7081_RS02915 (G7081_02915) - 561543..562157 (+) 615 WP_166008370.1 DUF1054 family protein -
  G7081_RS02920 (G7081_02920) - 562329..563336 (+) 1008 WP_166007240.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34032.79 Da        Isoelectric Point: 9.6472

>NTDB_id=428351 G7081_RS02895 WP_166007232.1 557788..558735(+) (ceuB) [Vagococcus coleopterorum strain HDW17A]
MKKYSLLVMLLSLAGVSLFIGVQSIPVSDVFQLNDNQSLVLWSTRVPRTVSLIIAGATSAVCGLIMQHLTQNKFVSPTTA
GTMDSARLGILVAMVFFPNGSTLVRSFVAFIFAFLGTVLFIQLIQRLPQKNQVMVPLVGLMFGNIVGSVVTFFAYQLELI
QNMSSWLQGNFSVLSRGGYELIYLTVPLLIVAYFYAYHFTIAGMGKDLATGIGLNYQVIQLFGLGLVALASSLILVTIGG
LPFLGVIIPNIVSLYFGDQMKQTIWVTAGAGSCFLIICDIISRLVIAPYEVPVSLTVGVIGSVIFIILLLKGAKK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=428351 G7081_RS02895 WP_166007232.1 557788..558735(+) (ceuB) [Vagococcus coleopterorum strain HDW17A]
ATGAAAAAATATAGTTTACTTGTGATGCTGTTGTCGTTGGCGGGAGTATCATTGTTTATTGGGGTTCAAAGTATCCCGGT
GTCAGATGTTTTTCAGCTCAATGATAATCAATCATTGGTGTTATGGTCGACACGTGTGCCAAGAACGGTTAGTTTGATTA
TCGCCGGTGCGACAAGTGCTGTTTGTGGATTAATCATGCAACATTTGACTCAAAATAAATTTGTATCGCCAACAACTGCG
GGGACAATGGATAGTGCTCGTCTTGGTATTTTAGTAGCGATGGTCTTTTTTCCAAATGGCTCAACATTAGTGCGCTCATT
TGTGGCATTTATCTTTGCATTTTTAGGAACCGTGTTATTTATCCAGTTGATCCAAAGATTACCTCAAAAAAATCAAGTGA
TGGTTCCCCTTGTAGGTTTAATGTTTGGGAACATTGTGGGGTCTGTGGTTACTTTCTTTGCTTATCAATTAGAGTTGATT
CAAAATATGTCATCATGGCTACAAGGTAATTTTTCAGTACTGTCACGTGGCGGATATGAGTTAATCTATTTAACCGTACC
ATTGCTAATTGTGGCTTACTTCTATGCCTATCACTTTACGATTGCTGGGATGGGAAAAGATCTCGCGACGGGAATTGGTT
TGAATTATCAAGTCATTCAACTTTTTGGTTTAGGGTTGGTTGCCTTGGCGAGTAGCTTGATTTTAGTGACAATTGGTGGT
TTGCCATTCTTAGGAGTTATCATTCCGAATATTGTTTCTTTGTATTTTGGAGATCAAATGAAGCAAACTATTTGGGTTAC
CGCAGGAGCAGGAAGTTGCTTTCTAATTATTTGTGATATCATTTCACGATTAGTGATTGCGCCATATGAGGTTCCTGTTA
GTTTGACAGTAGGAGTGATTGGTAGCGTTATTTTTATTATTTTATTGTTAAAGGGGGCTAAAAAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8AM01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.673

97.143

0.483