Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   G7081_RS00825 Genome accession   NZ_CP049886
Coordinates   164530..166344 (-) Length   604 a.a.
NCBI ID   WP_166006518.1    Uniprot ID   A0A6G8AL96
Organism   Vagococcus coleopterorum strain HDW17A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 159530..171344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7081_RS00800 (G7081_00800) - 160559..161473 (-) 915 WP_166006508.1 RluA family pseudouridine synthase -
  G7081_RS00805 (G7081_00805) - 161488..162291 (-) 804 WP_166006510.1 NAD kinase -
  G7081_RS00810 (G7081_00810) - 162331..163014 (-) 684 WP_166006512.1 GTP pyrophosphokinase -
  G7081_RS00815 (G7081_00815) - 163184..163774 (+) 591 WP_166006514.1 CYTH domain-containing protein -
  G7081_RS00820 (G7081_00820) - 163845..164501 (+) 657 WP_166006516.1 DsbA family protein -
  G7081_RS00825 (G7081_00825) pepF 164530..166344 (-) 1815 WP_166006518.1 oligoendopeptidase F Regulator
  G7081_RS00830 (G7081_00830) - 166376..167569 (-) 1194 WP_166006520.1 competence protein CoiA -
  G7081_RS00835 (G7081_00835) - 167648..168910 (-) 1263 WP_238786642.1 NCS2 family permease -
  G7081_RS00840 (G7081_00840) - 169076..169909 (-) 834 WP_238786643.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 68420.65 Da        Isoelectric Point: 4.5327

>NTDB_id=428340 G7081_RS00825 WP_166006518.1 164530..166344(-) (pepF) [Vagococcus coleopterorum strain HDW17A]
MTEVKQLPNRPEVATDMQWDLTKIFEDDQAFQVSFEKVTKKIGDLEKYRGTLNQGAAALYQALKSIETITGEVEVLYVYS
HLKNDQDTLNATYQSMNGQATRLISEYGQAVSWFEPELLTLSDEQIADYIKELPELELYQHFFAGVTKSRPHTLSEKEEA
ILAGAGEIFGAASQTFEMLDSGDLIFPVVKNDQGEEVQLSHGVYSQLLESSDRAVRQAAFEGLYSVYQQFENTFATILSN
HVKSTNFRAKVRNYPSARAAALSGNDLPETIYDTLIQSVHKHLPLFHDYLAVRKELLGLEELTMYDLHTPILGEASLAYN
YQEAKAVTLKALAPMGEDYLSIIEKAFDEGWIDVVENKGKRSGAYSSGCYDTEPYILMNWHDSLDQLYTLVHELGHSVHS
YYTRHNQPAVYGDYSIFLAEIASTTNENLLTEYLLATETDPKVRAYILNRYLDGFKGTVYRQTQFAEFEHFLYEQDAQGV
PLTSDVLKKEYGELNARYYGDVVVESQEIAVEWARIPHFYYNYYVYQYATGFAAASTLAARIVAKEEGALDAYLNYLKAG
SSDYPLAVIGQAGVDMTKEDYLTESFEVFAKRLAEFKQTVKTIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=428340 G7081_RS00825 WP_166006518.1 164530..166344(-) (pepF) [Vagococcus coleopterorum strain HDW17A]
ATGACAGAAGTGAAACAGTTACCAAACCGACCTGAGGTTGCTACAGATATGCAATGGGATTTAACTAAAATTTTTGAAGA
TGATCAAGCCTTTCAAGTTTCTTTTGAGAAGGTCACAAAAAAAATTGGTGACCTTGAAAAATATCGTGGGACTTTAAATC
AAGGAGCTGCGGCATTATATCAAGCGTTAAAAAGTATCGAAACCATTACAGGTGAAGTTGAAGTTCTGTATGTCTATAGC
CATTTGAAAAATGATCAAGACACATTAAATGCCACTTATCAAAGCATGAATGGTCAAGCAACACGTTTAATTTCAGAATA
TGGTCAAGCCGTTTCCTGGTTTGAACCAGAATTGCTGACGCTATCAGATGAACAAATTGCAGATTACATCAAGGAGTTAC
CTGAATTAGAACTGTACCAACATTTCTTTGCTGGCGTGACAAAATCTCGTCCTCATACATTATCTGAAAAAGAAGAAGCC
ATTTTAGCTGGCGCTGGAGAAATATTTGGGGCGGCAAGCCAAACTTTTGAAATGTTAGATAGTGGTGACTTAATCTTCCC
TGTAGTTAAAAATGATCAAGGTGAAGAGGTGCAATTAAGCCATGGGGTCTACAGTCAATTGTTAGAAAGTTCTGATAGAG
CCGTTCGTCAAGCAGCGTTTGAAGGCTTATACAGTGTTTACCAACAATTTGAAAATACTTTTGCCACAATCTTAAGTAAT
CACGTTAAATCAACCAATTTCCGAGCTAAAGTTCGCAATTATCCATCTGCTCGTGCGGCAGCCCTATCTGGCAATGATTT
ACCGGAAACGATTTATGACACATTGATCCAGTCCGTGCATAAACATTTACCATTATTCCACGATTATTTGGCGGTTCGTA
AGGAGTTACTTGGTTTAGAAGAGTTGACAATGTATGATTTACACACGCCAATTTTGGGTGAAGCGTCATTGGCATATAAT
TATCAAGAAGCCAAAGCAGTTACCTTGAAAGCATTAGCGCCGATGGGTGAAGACTACCTTTCTATTATTGAAAAAGCCTT
TGATGAGGGTTGGATTGATGTTGTTGAAAATAAAGGGAAACGAAGTGGTGCTTATTCTTCTGGTTGTTACGATACAGAGC
CTTATATTTTGATGAATTGGCATGATAGCTTAGATCAACTCTACACATTGGTTCATGAATTAGGACATAGTGTTCATAGT
TACTATACGCGCCACAATCAACCAGCTGTATATGGGGATTACTCAATCTTTTTAGCTGAGATTGCTTCAACAACAAATGA
AAACCTTTTGACAGAGTATTTATTAGCAACAGAAACTGATCCAAAAGTCAGAGCCTATATTTTAAACAGATATTTAGATG
GTTTTAAAGGGACGGTTTATCGTCAAACTCAGTTTGCAGAGTTTGAACACTTTTTATATGAACAAGATGCGCAAGGTGTT
CCTTTAACAAGTGATGTCTTGAAAAAAGAATATGGCGAATTAAATGCTCGTTATTACGGTGATGTGGTAGTTGAATCCCA
AGAAATTGCTGTTGAATGGGCGCGAATTCCTCATTTTTACTATAATTACTATGTTTACCAATATGCGACAGGTTTTGCAG
CGGCCTCAACTTTAGCGGCTAGAATTGTCGCTAAAGAAGAAGGCGCATTAGATGCTTATTTAAATTATCTAAAAGCGGGA
AGTAGTGATTATCCACTAGCTGTTATTGGACAAGCAGGCGTTGATATGACGAAAGAAGATTATTTAACAGAAAGTTTTGA
AGTCTTTGCTAAACGCTTAGCGGAATTTAAACAAACAGTTAAAACGATTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8AL96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.759

98.179

0.498