Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   G7081_RS00045 Genome accession   NZ_CP049886
Coordinates   6397..8070 (-) Length   557 a.a.
NCBI ID   WP_166006234.1    Uniprot ID   A0A6G8AKU9
Organism   Vagococcus coleopterorum strain HDW17A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1397..13070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7081_RS00015 (G7081_00015) ftsL 2638..3012 (-) 375 WP_166006224.1 cell division protein FtsL -
  G7081_RS00020 (G7081_00020) rsmH 3031..3984 (-) 954 WP_166006226.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  G7081_RS00025 (G7081_00025) mraZ 4077..4508 (-) 432 WP_166006228.1 division/cell wall cluster transcriptional repressor MraZ -
  G7081_RS00030 (G7081_00030) - 4676..5044 (-) 369 WP_166006230.1 DUF3397 domain-containing protein -
  G7081_RS00035 (G7081_00035) - 5189..6142 (+) 954 WP_166006232.1 magnesium transporter CorA family protein -
  G7081_RS00040 (G7081_00040) - 6233..6355 (+) 123 WP_202982266.1 DUF4044 domain-containing protein -
  G7081_RS00045 (G7081_00045) recN 6397..8070 (-) 1674 WP_166006234.1 DNA repair protein RecN Machinery gene
  G7081_RS00050 (G7081_00050) - 8082..8537 (-) 456 WP_166006236.1 arginine repressor -
  G7081_RS00055 (G7081_00055) - 8568..9401 (-) 834 WP_166008345.1 TlyA family RNA methyltransferase -
  G7081_RS00060 (G7081_00060) - 9421..10314 (-) 894 WP_166006238.1 polyprenyl synthetase family protein -
  G7081_RS00065 (G7081_00065) - 10320..10550 (-) 231 WP_166006240.1 exodeoxyribonuclease VII small subunit -
  G7081_RS00070 (G7081_00070) xseA 10551..11900 (-) 1350 WP_166006242.1 exodeoxyribonuclease VII large subunit -
  G7081_RS00075 (G7081_00075) - 11929..12759 (-) 831 WP_166006244.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 61875.02 Da        Isoelectric Point: 4.3866

>NTDB_id=428336 G7081_RS00045 WP_166006234.1 6397..8070(-) (recN) [Vagococcus coleopterorum strain HDW17A]
MLQELSIENFAIIEKLTTSFESGMTVLTGETGAGKSIIIDAVGLLTGGRGSVDFIRQGTPKCWLEGQFEVNQTPELSELL
ESLAIENPDNVLIVSREITTAGKNTCRVNGRLVNTTQLREIGRFLVDIQGQNEHQALLQSDQHLGMLDQFGGKELLIIKT
KYQELFASYQTLLRQVRNKQANEKEFAQRMDMLTFQSAEIAEADLKVGEEDSLIEERQRLNNFHQIVSALNTTYSALSDG
EPSALDSIGSAMSEMSEIENLDSEYSELSETVKSSYYQLQEAANQASRLVDSLEVDEDRINQVESRLDVIRQMKRKYGES
EEAILAYWESIDLELKEGAQANLSGEELTQALAEKEAELRLVAEELSVIRRQVATRLESEILEELAGLYLEKALFEVRFT
EVADFTVDGLETVEFYLTTNPGEPLKPLVKVASGGELSRILLALKAIFVKTQHITSIVFDEVDTGVSGRVAQGIANKIYQ
VSAGSQVLCISHLPQVAAMADCHLYISKEVVAGRTKTGLTQLSKEERVMEIARMLAGEEITELTKEHAKELLSLAHK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=428336 G7081_RS00045 WP_166006234.1 6397..8070(-) (recN) [Vagococcus coleopterorum strain HDW17A]
ATGTTACAAGAGTTATCAATTGAAAATTTTGCGATTATTGAAAAGTTAACCACATCATTTGAAAGTGGAATGACTGTTTT
GACTGGTGAAACTGGTGCTGGTAAATCAATTATTATTGATGCCGTCGGTTTGCTAACAGGTGGACGAGGTTCGGTAGACT
TCATTCGTCAAGGAACTCCTAAATGTTGGTTGGAAGGTCAGTTTGAAGTCAATCAAACACCAGAACTATCTGAATTATTA
GAGAGTTTAGCGATTGAAAATCCTGATAATGTTTTAATCGTCTCTCGAGAAATTACGACTGCCGGGAAAAATACTTGTCG
TGTTAATGGACGCTTAGTGAATACCACACAGTTGCGAGAAATCGGGCGATTCTTGGTGGATATTCAAGGTCAAAATGAAC
ACCAAGCCTTACTTCAGTCAGATCAACATCTAGGAATGTTAGATCAATTTGGTGGTAAAGAATTATTAATCATTAAGACT
AAGTATCAGGAATTATTTGCAAGTTACCAAACACTGTTGCGTCAAGTCCGCAATAAGCAAGCTAATGAAAAAGAGTTTGC
CCAACGAATGGATATGTTAACCTTTCAGTCTGCTGAAATAGCTGAAGCGGATTTGAAAGTGGGCGAAGAAGACTCTTTAA
TAGAAGAAAGACAACGTTTGAATAACTTTCATCAAATTGTCTCTGCCTTAAATACAACCTATAGTGCATTATCTGATGGC
GAACCAAGTGCTCTTGACAGTATTGGTTCTGCGATGTCAGAAATGTCAGAGATTGAAAATCTTGATTCCGAATATAGTGA
ACTATCGGAAACGGTTAAATCAAGTTATTATCAACTGCAAGAAGCTGCTAATCAAGCGAGTCGTTTAGTCGATAGCCTTG
AGGTAGATGAAGATCGTATTAATCAAGTAGAAAGTCGTTTAGATGTGATTCGTCAGATGAAACGTAAATACGGAGAATCT
GAAGAAGCCATTTTAGCTTATTGGGAAAGTATTGATCTTGAATTAAAAGAAGGTGCGCAAGCAAATCTTTCAGGTGAAGA
ATTAACGCAAGCTTTAGCGGAAAAAGAAGCAGAGCTACGACTGGTTGCGGAAGAACTATCTGTTATTCGCCGACAAGTTG
CAACCCGTTTAGAATCTGAAATTCTTGAAGAATTAGCTGGCTTGTATTTAGAGAAGGCGCTATTTGAAGTTCGTTTTACT
GAAGTGGCAGATTTTACAGTTGATGGGTTAGAAACTGTAGAATTTTACTTAACGACTAACCCAGGGGAACCGTTAAAACC
ATTAGTTAAAGTCGCTTCTGGGGGTGAGTTGTCACGAATTCTATTAGCATTAAAAGCGATTTTTGTTAAAACGCAACACA
TTACAAGTATCGTCTTCGATGAGGTTGATACTGGTGTGAGTGGTCGTGTCGCTCAAGGGATTGCGAATAAGATCTACCAA
GTTTCAGCAGGATCGCAAGTGCTTTGTATTTCTCATTTGCCGCAAGTAGCAGCAATGGCGGATTGTCATTTATATATCTC
TAAAGAAGTTGTTGCTGGTCGAACTAAGACGGGTTTAACGCAACTGTCTAAAGAAGAGCGTGTCATGGAAATTGCCCGGA
TGTTAGCGGGTGAAGAAATTACTGAGTTAACCAAAGAACATGCGAAAGAGTTACTATCTTTAGCTCACAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8AKU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.368

100

0.485