Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G7045_RS11130 Genome accession   NZ_CP049885
Coordinates   2421199..2421642 (-) Length   147 a.a.
NCBI ID   WP_166160442.1    Uniprot ID   A0A6G8AKL7
Organism   Acidovorax sp. HDW3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2416199..2426642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7045_RS14960 (G7045_11125) - 2416989..2417339 (+) 351 WP_370521634.1 HipA domain-containing protein -
  G7045_RS11125 (G7045_11130) - 2417252..2421043 (-) 3792 WP_166159697.1 phosphatase PAP2 family protein -
  G7045_RS11130 (G7045_11135) pilA 2421199..2421642 (-) 444 WP_166160442.1 pilin Machinery gene
  G7045_RS11135 (G7045_11140) - 2421852..2423405 (-) 1554 WP_166159698.1 ATP-binding protein -
  G7045_RS11140 (G7045_11145) - 2423415..2424965 (-) 1551 WP_166159699.1 ATP-binding protein -
  G7045_RS11145 (G7045_11150) - 2424975..2426528 (-) 1554 WP_166160443.1 ATP-binding protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 14768.87 Da        Isoelectric Point: 9.5793

>NTDB_id=428331 G7045_RS11130 WP_166160442.1 2421199..2421642(-) (pilA) [Acidovorax sp. HDW3]
MNRTMRSVQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRGRVSEALVAASAAKAAVAENAASGSDLNSGYVAPTATSN
VTSVSVASATGQITVTTTSKAGGGTIVFIPTSGGAALAAGTLPTDRIAWSCTTGSLSAKYRPSECRP

Nucleotide


Download         Length: 444 bp        

>NTDB_id=428331 G7045_RS11130 WP_166160442.1 2421199..2421642(-) (pilA) [Acidovorax sp. HDW3]
ATGAACCGCACTATGCGTTCCGTGCAAAAGGGTTTCACCCTGATCGAATTGATGATCGTTGTGGCGATTATCGGTATTTT
GGCTGCTGTGGCTTTGCCGGCGTATCAGGATTACACCGTTCGCGGTCGTGTTTCTGAAGCCCTGGTGGCCGCCTCTGCCG
CTAAGGCTGCTGTGGCTGAAAACGCAGCTTCCGGCTCTGATTTGAATTCTGGTTACGTGGCGCCTACTGCTACCAGCAAC
GTGACCAGCGTTTCTGTCGCCTCTGCCACTGGCCAAATTACCGTGACCACCACCTCTAAGGCTGGCGGCGGCACTATCGT
CTTCATTCCTACTTCTGGCGGCGCTGCCTTGGCCGCAGGCACTCTCCCGACCGACCGCATCGCTTGGAGCTGCACCACCG
GTAGCCTGTCGGCCAAGTACCGTCCTTCGGAATGCCGTCCGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(40-146)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8AKL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

51.515

100

0.578
  pilA2 Legionella pneumophila str. Paris

56.25

97.959

0.551
  pilA2 Legionella pneumophila strain ERS1305867

55.556

97.959

0.544
  comP Acinetobacter baylyi ADP1

49.351

100

0.517
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

39.583

100

0.517
  pilA/pilA1 Eikenella corrodens VA1

36.97

100

0.415
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.216

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.597

100

0.401
  pilA Pseudomonas aeruginosa PAK

38.356

99.32

0.381