Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G7045_RS02555 Genome accession   NZ_CP049885
Coordinates   576741..577811 (-) Length   356 a.a.
NCBI ID   WP_166156869.1    Uniprot ID   A0A6G8AE46
Organism   Acidovorax sp. HDW3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571741..582811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7045_RS02540 (G7045_02540) cutA 572478..572822 (+) 345 WP_166156860.1 divalent-cation tolerance protein CutA -
  G7045_RS02545 (G7045_02545) - 572843..573916 (-) 1074 WP_166156863.1 hypothetical protein -
  G7045_RS02550 (G7045_02550) - 573972..576626 (-) 2655 WP_166156866.1 EAL domain-containing protein -
  G7045_RS02555 (G7045_02555) pilA 576741..577811 (-) 1071 WP_166156869.1 signal recognition particle-docking protein FtsY Machinery gene
  G7045_RS02560 (G7045_02560) - 577840..579285 (+) 1446 WP_166156872.1 pitrilysin family protein -
  G7045_RS02565 (G7045_02565) - 579298..580641 (+) 1344 WP_370521695.1 M16 family metallopeptidase -
  G7045_RS02570 (G7045_02570) rsmD 580638..581255 (+) 618 WP_166156875.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  G7045_RS02575 (G7045_02575) coaD 581321..581806 (+) 486 WP_166156878.1 pantetheine-phosphate adenylyltransferase -
  G7045_RS02580 (G7045_02580) - 581796..582128 (-) 333 WP_166156881.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37132.65 Da        Isoelectric Point: 6.9878

>NTDB_id=428323 G7045_RS02555 WP_166156869.1 576741..577811(-) (pilA) [Acidovorax sp. HDW3]
MFSFFKKKPPLPGDAPTTAAPASTAAGAAVPAPAPAAPEAAALPGAPEPSAKPETAHARQGWMERLKAGLRKTGSSIATV
FTGTKIDDALYEELEEALLMADTGVKATEHLLQDLKRRVKEAKATEPAAVKTLLADALADLLRPLEKPLCIGAQQPTVIM
VAGVNGAGKTTSIGKLTKHLADSGQSVLLAAADTFRAAAREQLGVWATRNTVEIVSQEGGDPAAVSFDAVSAGRARGKDV
VLVDTAGRLPTQLHLMQELQKIKRVVTKADASAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLA
AIAQERPIPVYFIGVGERVQDLETFNAREFAQALLA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=428323 G7045_RS02555 WP_166156869.1 576741..577811(-) (pilA) [Acidovorax sp. HDW3]
ATGTTCAGCTTTTTCAAGAAAAAACCGCCGCTGCCCGGCGACGCCCCCACCACCGCCGCCCCTGCGAGCACCGCCGCTGG
TGCTGCAGTGCCTGCGCCGGCCCCCGCCGCCCCCGAAGCCGCCGCCCTGCCCGGCGCCCCCGAGCCCAGCGCCAAGCCCG
AAACAGCCCATGCGCGCCAGGGCTGGATGGAGCGCCTCAAAGCCGGCCTGCGCAAAACCGGCAGCTCCATCGCCACGGTG
TTCACCGGCACCAAGATCGACGATGCGCTGTACGAGGAGCTGGAAGAAGCCCTGCTGATGGCCGACACCGGCGTCAAGGC
CACCGAACATTTGCTGCAGGACTTGAAGCGCCGCGTGAAAGAGGCCAAGGCGACCGAGCCCGCCGCCGTCAAGACGCTGC
TGGCCGACGCCCTGGCCGACCTGCTGCGGCCGCTGGAAAAACCGCTGTGCATTGGCGCGCAGCAGCCCACCGTCATCATG
GTCGCGGGCGTGAACGGCGCCGGCAAGACGACCTCCATCGGCAAGCTCACCAAACACCTGGCCGACAGCGGCCAAAGCGT
GCTGCTGGCCGCAGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGGCGTCTGGGCCACGCGCAACACGGTCGAGA
TCGTGAGCCAGGAAGGCGGCGACCCGGCCGCCGTCAGCTTCGACGCCGTCAGCGCCGGGCGCGCACGCGGCAAGGACGTG
GTACTGGTCGATACCGCCGGGCGCCTGCCCACCCAGCTGCACCTGATGCAGGAGCTGCAAAAAATCAAACGCGTGGTCAC
CAAGGCCGACGCCAGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCCCTGGCGCAGGTGC
GCGCCTTCGACGATGCGCTGCAGCTCACCGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCG
GCGATTGCGCAAGAGCGCCCCATTCCGGTGTACTTCATCGGCGTTGGCGAGCGCGTGCAAGACCTGGAAACCTTCAACGC
ACGCGAATTTGCGCAGGCGCTGCTGGCGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(156-355)

SRP54-type protein, helical bundle domain (SRP54_N)

(75-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8AE46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.17

85.955

0.5