Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   G7045_RS02370 Genome accession   NZ_CP049885
Coordinates   527939..529465 (-) Length   508 a.a.
NCBI ID   WP_166156768.1    Uniprot ID   A0A6G8AE21
Organism   Acidovorax sp. HDW3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 522939..534465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7045_RS02350 (G7045_02350) - 523735..524190 (-) 456 WP_166156755.1 PIN domain-containing protein -
  G7045_RS02355 (G7045_02355) - 524203..525474 (-) 1272 WP_166156758.1 class I SAM-dependent RNA methyltransferase -
  G7045_RS02360 (G7045_02360) - 525662..527497 (+) 1836 WP_166156761.1 methyl-accepting chemotaxis protein -
  G7045_RS02365 (G7045_02365) - 527498..527926 (-) 429 WP_166156765.1 thioesterase family protein -
  G7045_RS02370 (G7045_02370) rpoN/rpoN1 527939..529465 (-) 1527 WP_166156768.1 RNA polymerase factor sigma-54 Machinery gene
  G7045_RS02375 (G7045_02375) lptB 529480..530247 (-) 768 WP_166156770.1 LPS export ABC transporter ATP-binding protein -
  G7045_RS02380 (G7045_02380) lptA 530250..530885 (-) 636 WP_166156773.1 lipopolysaccharide transport periplasmic protein LptA -
  G7045_RS02385 (G7045_02385) - 530963..532645 (-) 1683 WP_166160320.1 cation acetate symporter -
  G7045_RS02390 (G7045_02390) - 532645..532965 (-) 321 WP_205737199.1 DUF485 domain-containing protein -
  G7045_RS02395 (G7045_02395) - 533158..533790 (-) 633 WP_166156776.1 thiol:disulfide interchange protein DsbA/DsbL -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55267.93 Da        Isoelectric Point: 4.9077

>NTDB_id=428322 G7045_RS02370 WP_166156768.1 527939..529465(-) (rpoN/rpoN1) [Acidovorax sp. HDW3]
MQPSLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDDNPFLERDGDSDGHTDDTPTPPPEAAHDAPISGATDAD
PASAGAENDADYQPTDWEGEGAIDSAHADGEWGFEGAPRQASAGEDDEQLDAGSRADSHESLAAHLHRQALVLRLGEDDR
AALYFLIESLSDDGYLEEPLDALAAHLAGASTGEAYEALLHHLSVALGLLQHLEPAGVGASGLAQCLQLQLHALEREEWG
DPALLATAQQLCAQPLELLARRDLRRLAQHCACDEEQVRAALTVIARLEPHPGRRFADVSRHALVPDVIVSKAGNGFRVQ
LNPDVMPRLRVHEVYANALRGQRGSDGHAGLQARLQEARWFIKNIQQRFDTILRVSQAIVERQKSFFVHGALAMRPLVLR
EIADELGLHESTISRVTSAKYMATPQGTFELKYFFGSGLGTETGGSASSTAVRALIRQFVAAENPTKPLSDSQLAEMLKE
QGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=428322 G7045_RS02370 WP_166156768.1 527939..529465(-) (rpoN/rpoN1) [Acidovorax sp. HDW3]
ATGCAGCCCAGCCTGTCGCTGCGCGTCTCGCAGCACCTCGCCCTCACACCGCAGCTGCAGCAGTCGATCCGGCTGCTGCA
GCTCTCGACCCTGGAGATGGCGCAGGAAGTCGAGCAAATGCTCGATGACAACCCCTTTCTGGAGCGCGACGGCGACAGCG
ACGGCCACACCGACGACACCCCCACGCCGCCCCCGGAGGCGGCCCATGATGCTCCTATTTCAGGAGCTACTGACGCTGAT
CCAGCAAGCGCTGGAGCCGAAAATGATGCCGATTACCAGCCCACCGACTGGGAGGGCGAAGGCGCCATCGACAGCGCCCA
CGCCGACGGTGAATGGGGCTTTGAGGGTGCGCCGCGCCAGGCCAGCGCGGGCGAAGACGACGAGCAGCTCGACGCCGGCA
GCCGCGCCGACAGCCACGAGTCCCTGGCCGCGCACCTGCACCGCCAGGCGCTGGTGCTGCGCCTGGGCGAGGACGACCGC
GCAGCGCTGTACTTCCTGATCGAATCGCTGAGCGACGACGGCTACCTTGAAGAACCCCTGGATGCGCTCGCCGCCCACCT
CGCAGGCGCCAGCACTGGCGAAGCCTATGAGGCGCTGCTGCACCACCTGAGCGTCGCCCTGGGCCTGCTGCAGCACCTGG
AGCCCGCCGGCGTCGGCGCCAGCGGCCTGGCGCAATGCCTGCAGCTGCAGCTGCACGCGCTCGAACGCGAAGAATGGGGC
GACCCGGCCCTGCTCGCCACGGCACAGCAGCTGTGCGCGCAGCCGCTGGAGCTGCTGGCACGGCGCGACCTGCGCCGCCT
GGCGCAGCACTGCGCCTGCGACGAAGAGCAGGTGCGCGCCGCCCTGACCGTGATCGCGCGCCTGGAGCCGCACCCCGGGC
GGCGCTTTGCCGACGTCAGCCGCCACGCCCTGGTGCCCGACGTCATCGTCAGCAAGGCTGGCAACGGCTTTCGCGTGCAG
CTCAACCCCGACGTCATGCCACGCCTGCGCGTGCACGAGGTCTACGCCAACGCCCTGCGCGGCCAGCGCGGCAGCGACGG
CCATGCCGGGCTGCAAGCACGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGACACCATCTTGC
GGGTCTCGCAGGCCATCGTCGAGCGGCAAAAAAGCTTCTTCGTGCACGGCGCGCTCGCCATGCGCCCGCTGGTGCTGCGC
GAAATTGCCGACGAGCTCGGGCTGCACGAATCGACCATCTCGCGCGTCACCAGCGCCAAGTACATGGCCACGCCCCAGGG
CACGTTCGAGCTGAAGTATTTTTTTGGTTCCGGCCTGGGCACGGAAACCGGCGGCAGCGCCTCCAGCACCGCCGTACGCG
CGCTCATCCGGCAATTCGTCGCCGCCGAGAACCCGACCAAGCCGCTGTCGGACAGCCAGCTGGCCGAAATGCTCAAAGAA
CAAGGCATAGAGTGCGCACGCCGCACCGTCGCCAAATACCGCGAGGCGCTGAAAATCGCCCCCGCCAACCTGCGCAAAGC
GCTTTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(351-506)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(135-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8AE21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.901

100

0.537