Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7069_RS00715 Genome accession   NZ_CP049864
Coordinates   149680..150177 (-) Length   165 a.a.
NCBI ID   WP_166293345.1    Uniprot ID   A0A6G7YU36
Organism   Lysobacter sp. HDW10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 144680..155177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7069_RS00705 (G7069_00705) - 145518..147560 (-) 2043 WP_166293343.1 S9 family peptidase -
  G7069_RS00710 (G7069_00710) - 147582..149567 (-) 1986 WP_166293344.1 oligopeptide transporter, OPT family -
  G7069_RS00715 (G7069_00715) ssb 149680..150177 (-) 498 WP_166293345.1 single-stranded DNA-binding protein Machinery gene
  G7069_RS00720 (G7069_00720) - 150335..151321 (+) 987 WP_166293346.1 polyprenyl synthetase family protein -
  G7069_RS00725 (G7069_00725) - 151323..152045 (-) 723 WP_166297386.1 dienelactone hydrolase family protein -
  G7069_RS00730 (G7069_00730) murD 152170..153552 (-) 1383 WP_166293347.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  G7069_RS00735 (G7069_00735) murL 153539..154888 (-) 1350 WP_166297388.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17745.76 Da        Isoelectric Point: 5.8150

>NTDB_id=428233 G7069_RS00715 WP_166293345.1 149680..150177(-) (ssb) [Lysobacter sp. HDW10]
MARGINKVILVGNLGNDPEVKFSQGGMAICTISLATTTVRKDREGNSQEKTEWHRVKLFGKLGEIAGEYLKKGRTVYIEG
RIEYGSYDKDGQKHYTTDIIADEMQMLGGGGGAGEGGRGSYEGGGNDVSRGPRNQPAQRREPANAPAPAQIPNDFGGMPD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=428233 G7069_RS00715 WP_166293345.1 149680..150177(-) (ssb) [Lysobacter sp. HDW10]
ATGGCTCGCGGAATCAACAAAGTGATCCTGGTCGGCAACTTAGGCAATGACCCCGAAGTGAAGTTCTCACAAGGTGGCAT
GGCCATTTGCACGATCAGTCTGGCTACGACCACGGTCCGTAAAGACCGCGAAGGCAACAGCCAAGAAAAGACCGAATGGC
ATCGTGTAAAGCTCTTTGGCAAGCTCGGTGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCACCGTCTACATCGAAGGC
CGTATCGAATACGGTTCTTACGATAAGGACGGCCAAAAGCACTACACCACAGACATCATCGCAGACGAAATGCAAATGCT
CGGCGGTGGCGGCGGTGCAGGTGAAGGCGGACGTGGCAGCTACGAAGGTGGCGGCAACGATGTCAGCCGCGGCCCACGAA
ATCAACCGGCGCAGCGCCGTGAGCCGGCCAATGCGCCAGCCCCGGCACAGATCCCGAATGACTTCGGCGGTATGCCCGAC
GACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7YU36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.505

100

0.491
  ssb Neisseria meningitidis MC58

43.333

100

0.473
  ssb Neisseria gonorrhoeae MS11

42.778

100

0.467
  ssb Glaesserella parasuis strain SC1401

39.56

100

0.436