Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   G7059_RS04345 Genome accession   NZ_CP049859
Coordinates   871556..873355 (+) Length   599 a.a.
NCBI ID   WP_166080869.1    Uniprot ID   A0A6G7WXM6
Organism   Erysipelothrix sp. HDW6A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 866556..878355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7059_RS04300 (G7059_04300) - 867571..868149 (-) 579 WP_166080864.1 histidine phosphatase family protein -
  G7059_RS04305 (G7059_04305) - 868162..869013 (-) 852 WP_166080865.1 aldo/keto reductase -
  G7059_RS04310 (G7059_04310) - 869103..869498 (+) 396 WP_166080866.1 MerR family transcriptional regulator -
  G7059_RS04325 (G7059_04325) - 869887..870558 (+) 672 WP_166080867.1 alpha/beta fold hydrolase -
  G7059_RS04335 (G7059_04335) - 870798..871142 (-) 345 WP_166080868.1 DUF6054 family protein -
  G7059_RS04345 (G7059_04345) pepF 871556..873355 (+) 1800 WP_166080869.1 oligoendopeptidase F Regulator
  G7059_RS10510 - 873549..874394 (+) 846 Protein_854 formylglycine-generating enzyme family protein -
  G7059_RS04360 (G7059_04360) - 874425..874814 (-) 390 WP_166080872.1 CoA-binding protein -
  G7059_RS04365 (G7059_04365) - 874870..875838 (-) 969 WP_166080873.1 VOC family protein -
  G7059_RS04370 (G7059_04370) - 876084..876449 (+) 366 WP_166080874.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68699.09 Da        Isoelectric Point: 4.7518

>NTDB_id=428195 G7059_RS04345 WP_166080869.1 871556..873355(+) (pepF) [Erysipelothrix sp. HDW6A]
MSNKYELPQRSEVAIQDTWDLTPIFASDEAWYQEFEKLSKDLGDVSGFIGKLTDSADALLSGLKYRDDMSYRLEMLYVYA
HLMFDVDTTDSKYQAMNAKIQSLVADFGASFAFYSTELLAGDEKQIRGFLESNEALGLYTHEFDRLFKSRAHILSDKEEK
LLASAGEIFSIPSTTFGMINNADIKFPTIKDENGVDVQLSHGIYSLMMENPNRDLRERAFKAMQNTYGDLKNTLASTLSG
NVKIHNYSARIRHYESARHQALFGNDIDEAVHQNLIDGIHKNIHLLHDYVALRQDALGLEDIQMYDLYTPMVDDVDLSFT
YEEAKAIILEALSVMGEEYSAVLKRAFNERWIDVKENKGKRSGAYSSGVYGTAPYILMNWRDTIDNMFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKIRAYLLNHYLDTVKGTVFRQTQFAEFEHNIHVADQEGT
ALTADYLIDSYYALNQYYYGEKVSTKEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLEFLKSGSKD
YPINVLKKAGVDMHDTLAIDTTLNKFDECLKELRTLIVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=428195 G7059_RS04345 WP_166080869.1 871556..873355(+) (pepF) [Erysipelothrix sp. HDW6A]
ATGTCAAATAAATATGAATTACCACAACGTTCAGAAGTAGCAATACAAGATACTTGGGATTTGACACCAATCTTCGCAAG
TGATGAAGCTTGGTATCAAGAGTTTGAAAAACTTAGTAAAGATCTTGGTGATGTAAGTGGGTTTATCGGAAAACTTACAG
ATTCTGCAGATGCATTACTATCAGGTTTAAAATATCGTGATGATATGAGCTATCGCCTTGAAATGCTATATGTTTATGCA
CATCTAATGTTTGATGTCGATACAACTGACAGTAAGTATCAAGCAATGAATGCAAAGATTCAGTCACTTGTTGCTGATTT
TGGTGCAAGTTTTGCATTTTATAGCACTGAATTATTAGCAGGCGATGAGAAACAAATTCGAGGATTTCTTGAGTCAAATG
AAGCATTAGGATTATATACTCATGAATTTGATCGACTCTTTAAATCACGTGCTCACATTTTAAGTGATAAAGAAGAAAAA
CTCTTAGCATCAGCAGGAGAAATCTTTAGCATTCCTTCAACAACTTTCGGTATGATCAACAATGCCGATATTAAGTTCCC
AACAATCAAAGATGAAAATGGCGTTGATGTTCAGTTATCGCATGGTATTTATTCATTAATGATGGAAAATCCTAATCGTG
ATTTACGTGAACGCGCATTTAAAGCAATGCAAAACACTTATGGTGACCTAAAAAACACCTTAGCAAGTACATTGTCCGGA
AATGTGAAGATTCATAACTACAGTGCTAGAATCCGTCACTATGAGTCGGCACGTCATCAAGCTTTATTTGGAAATGATAT
TGATGAAGCCGTTCACCAAAACTTAATCGATGGAATTCACAAGAATATTCATTTACTTCATGATTATGTAGCATTACGTC
AAGATGCACTTGGTTTAGAAGACATTCAAATGTATGACCTGTATACTCCAATGGTTGATGATGTAGACTTAAGCTTTACT
TATGAAGAAGCAAAAGCAATCATTCTCGAAGCATTAAGCGTTATGGGTGAAGAATACTCAGCAGTCCTAAAACGTGCGTT
TAACGAACGTTGGATTGACGTTAAAGAGAATAAAGGTAAACGTTCAGGTGCTTATTCCTCAGGTGTTTATGGTACAGCTC
CATACATCCTTATGAACTGGCGTGATACAATTGATAACATGTTCACCTTAGCTCATGAGTTAGGACACTCTGTTCACTCA
TACTTTACTCGTAAGTATCAACCTTATATTTATGGAGATTATTCAATCTTTGTAGCAGAAGTTGCTTCAACTACAAACGA
GAACCTATTACTTAACTACTTGTTAGATCAGTATGAAGATCCAAAAATTCGTGCATACTTACTTAACCATTATCTTGATA
CAGTTAAAGGAACTGTATTCCGTCAAACTCAATTTGCAGAGTTTGAACATAATATCCATGTTGCTGATCAAGAAGGTACA
GCATTAACTGCAGACTACCTCATTGATTCATACTATGCTCTAAATCAATACTACTATGGCGAGAAAGTATCAACAAAAGA
AATAGGATACGAATGGGCACGTATTCCACACTTCTACTACAACTATTATGTTTACCAATATGCAACTGGATTCAGTGCAG
CAACACTCTTCTCGGAGACAATCTATAACGGTGGAGATGCAACTCCTTATCTTGAATTCTTGAAATCAGGAAGTAAAGAT
TACCCAATTAATGTCTTGAAAAAAGCAGGTGTAGATATGCATGATACCCTCGCAATTGATACTACATTGAATAAGTTTGA
TGAATGCCTAAAAGAATTACGTACATTAATTGTTAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-581)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7WXM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

98.998

0.494