Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G9W34_RS08020 Genome accession   NZ_CP049852
Coordinates   1693674..1694303 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain UPEC-774U/190308     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1688674..1699303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9W34_RS08000 (G9W34_07970) ycbZ 1689074..1690834 (-) 1761 WP_000156498.1 Lon protease family protein -
  G9W34_RS08005 (G9W34_07975) matP 1691020..1691472 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  G9W34_RS08010 (G9W34_07980) ompA 1691550..1692590 (-) 1041 WP_001313715.1 porin OmpA -
  G9W34_RS08015 (G9W34_07985) sulA 1692946..1693455 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  G9W34_RS08020 (G9W34_07990) sxy/tfoX 1693674..1694303 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G9W34_RS08025 (G9W34_07995) yccS 1694266..1696428 (-) 2163 WP_000875041.1 YccS family putative transporter -
  G9W34_RS08030 (G9W34_08000) yccF 1696438..1696884 (-) 447 WP_001261236.1 YccF domain-containing protein -
  G9W34_RS08035 (G9W34_08005) helD 1697007..1699061 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=428161 G9W34_RS08020 WP_000839136.1 1693674..1694303(+) (sxy/tfoX) [Escherichia coli strain UPEC-774U/190308]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=428161 G9W34_RS08020 WP_000839136.1 1693674..1694303(+) (sxy/tfoX) [Escherichia coli strain UPEC-774U/190308]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99