Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECWSU1_RS07560 Genome accession   NC_016514
Coordinates   1620012..1620638 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615012..1625638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECWSU1_RS07540 (EcWSU1_01537) - 1615406..1617166 (-) 1761 WP_014169428.1 Lon protease family protein -
  ECWSU1_RS07545 (EcWSU1_01538) matP 1617353..1617805 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  ECWSU1_RS07550 (EcWSU1_01539) ompA 1617875..1618930 (-) 1056 WP_020884794.1 porin OmpA -
  ECWSU1_RS07555 (EcWSU1_01540) sulA 1619285..1619794 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  ECWSU1_RS07560 (EcWSU1_01541) sxy/tfoX 1620012..1620638 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  ECWSU1_RS07565 (EcWSU1_01542) yccS 1620595..1622757 (-) 2163 WP_020884791.1 YccS family putative transporter -
  ECWSU1_RS07570 (EcWSU1_01543) - 1622777..1623223 (-) 447 WP_014169434.1 YccF domain-containing protein -
  ECWSU1_RS07575 (EcWSU1_01544) helD 1623347..1625401 (+) 2055 WP_014169435.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=42813 ECWSU1_RS07560 WP_020884792.1 1620012..1620638(+) (sxy/tfoX) [Enterobacter ludwigii]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=42813 ECWSU1_RS07560 WP_020884792.1 1620012..1620638(+) (sxy/tfoX) [Enterobacter ludwigii]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGTGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAGCTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCATCATTCTTAACCCTGATGAAACGGGGTCGCCCAGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577

Multiple sequence alignment