Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IF704_RS03305 Genome accession   NZ_CP062380
Coordinates   599434..600060 (-) Length   208 a.a.
NCBI ID   WP_001108892.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_076     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 594434..605060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF704_RS03285 (IF704_03245) - 595056..595742 (+) 687 WP_000362213.1 DnaD domain-containing protein -
  IF704_RS03290 (IF704_03250) nth 595732..596391 (+) 660 WP_000253768.1 endonuclease III -
  IF704_RS03295 (IF704_03255) - 596396..596737 (+) 342 WP_000182028.1 YpoC family protein -
  IF704_RS03300 (IF704_03260) - 597254..599437 (-) 2184 WP_000138347.1 transglycosylase domain-containing protein -
  IF704_RS03305 (IF704_03265) recU 599434..600060 (-) 627 WP_001108892.1 Holliday junction resolvase RecU Machinery gene
  IF704_RS03310 (IF704_03270) - 600366..600545 (+) 180 WP_001788819.1 hypothetical protein -
  IF704_RS03315 (IF704_03275) - 600600..600950 (+) 351 WP_001000802.1 YppE family protein -
  IF704_RS03320 (IF704_03280) - 600943..601506 (+) 564 WP_000241310.1 DUF1273 domain-containing protein -
  IF704_RS03325 (IF704_03285) gpsB 601520..601864 (+) 345 WP_001286320.1 cell division regulator GpsB -
  IF704_RS03335 (IF704_03295) - 602516..603661 (+) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  IF704_RS03340 (IF704_03300) - 603745..604077 (+) 333 WP_000516800.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=428100 IF704_RS03305 WP_001108892.1 599434..600060(-) (recU) [Staphylococcus aureus strain NAS_AN_076]
MNYPNGKPYRKNSALDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=428100 IF704_RS03305 WP_001108892.1 599434..600060(-) (recU) [Staphylococcus aureus strain NAS_AN_076]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTTTAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCAACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529