Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   G8765_RS03630 Genome accession   NZ_CP049828
Coordinates   828051..829529 (+) Length   492 a.a.
NCBI ID   WP_092609065.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 823051..834529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8765_RS03605 (G8765_03605) - 824487..825497 (+) 1011 WP_151092312.1 KpsF/GutQ family sugar-phosphate isomerase -
  G8765_RS03610 (G8765_03610) - 825497..826030 (+) 534 WP_034778379.1 HAD hydrolase family protein -
  G8765_RS03615 (G8765_03615) lptC 826073..826684 (+) 612 WP_034778380.1 LPS export ABC transporter periplasmic protein LptC -
  G8765_RS03620 (G8765_03620) lptA 826710..827291 (+) 582 WP_034778381.1 lipopolysaccharide transport periplasmic protein LptA -
  G8765_RS03625 (G8765_03625) lptB 827291..828046 (+) 756 WP_034753325.1 LPS export ABC transporter ATP-binding protein -
  G8765_RS03630 (G8765_03630) rpoN/rpoN1 828051..829529 (+) 1479 WP_092609065.1 RNA polymerase factor sigma-54 Machinery gene
  G8765_RS03635 (G8765_03635) raiA 829599..829961 (+) 363 WP_034778388.1 ribosome-associated translation inhibitor RaiA -
  G8765_RS03640 (G8765_03640) - 830097..831182 (+) 1086 WP_176381656.1 enoyl-CoA hydratase/isomerase family protein -
  G8765_RS03645 (G8765_03645) rapZ 831183..832046 (-) 864 WP_035824128.1 RNase adapter RapZ -
  G8765_RS03650 (G8765_03650) hprK 832262..833197 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  G8765_RS03655 (G8765_03655) - 833240..833722 (-) 483 WP_034753339.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54539.21 Da        Isoelectric Point: 5.1050

>NTDB_id=428045 G8765_RS03630 WP_092609065.1 828051..829529(+) (rpoN/rpoN1) [Janthinobacterium lividum strain EIF2]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
GQEAPAAPAEAETFDGDAGEGPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHIAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDDEDLREAQTVIRQCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=428045 G8765_RS03630 WP_092609065.1 828051..829529(+) (rpoN/rpoN1) [Janthinobacterium lividum strain EIF2]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACCCTGGAATTGCATCAGGAATTAGAGCAATTGCTGACGGACAATCCCTTGCTCGAACGCCTCGACGATCCGC
TCGACCGTTCGTTGCGCCTGCTGTCCGACGGCGCCTTGAGTTCCACGGCCGCGCCGGCCGAAGCGCCGCCCCAGCCGCCA
GGCCAGGAAGCGCCCGCAGCGCCGGCCGAAGCGGAAACCTTTGATGGCGATGCCGGCGAGGGTCCGGCCGCCGCGGATGG
CGGCGACAGCGACTGGAGCGAGGCGAGCCGCGGCAAGGCGCCCGACGACGAAGATTCGCGCCCGCAACTGGAGGCCCATC
ACTGCACCCTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTGCTTGAATTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGATGCGCTCGACGACAACGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGACGCCGACGAGATGCGCACGGCCTTGTCTCTCTTGCAAAGTTTCGATCCGCCCGGCGTGGGCGCGCGCAATGCCT
CCGAATGCCTGGCGCTGCAAATCAAGCGTTTGCCGCACATCGCCATGGTGACGCGCCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGATGAAGACTTGCGCGA
AGCGCAGACGGTGATTCGCCAGTGCAATCCGCATCCGGGCGCCGTGTTCGCCTCGGACGTGTCCGATTACGTGGTGCCCG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTCACCCTGAACAACGATGTCATGCCGCGCCTGCGCGTCAATGCC
ATGTACGCCAACTTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGCGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGCTTCGACACGATCCTGCGCGTGGCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGTCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAGCAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.707

100

0.628