Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G4D76_RS07070 Genome accession   NZ_CP049818
Coordinates   1197487..1198863 (-) Length   458 a.a.
NCBI ID   WP_213810937.1    Uniprot ID   -
Organism   Jeotgalicoccus sp. WY2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192487..1203863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D76_RS07045 cysE 1192903..1193559 (-) 657 WP_035785993.1 serine O-acetyltransferase -
  G4D76_RS07050 gltX 1193805..1195259 (-) 1455 WP_156897241.1 glutamate--tRNA ligase -
  G4D76_RS07055 ispF 1195256..1195741 (-) 486 WP_026860126.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  G4D76_RS07060 ispD 1195746..1196417 (-) 672 WP_026860125.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  G4D76_RS07065 - 1196414..1197472 (-) 1059 WP_213810936.1 PIN/TRAM domain-containing protein -
  G4D76_RS07070 radA 1197487..1198863 (-) 1377 WP_213810937.1 DNA repair protein RadA Machinery gene
  G4D76_RS15905 - 1199078..1199212 (+) 135 WP_256440548.1 hypothetical protein -
  G4D76_RS07075 - 1199206..1200554 (+) 1349 Protein_1503 anthranilate synthase component I family protein -
  G4D76_RS07080 - 1200610..1203051 (-) 2442 Protein_1504 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50001.53 Da        Isoelectric Point: 7.7616

>NTDB_id=428025 G4D76_RS07070 WP_213810937.1 1197487..1198863(-) (radA) [Jeotgalicoccus sp. WY2]
MAKAKVSFECMACGYESPKWMGKCPNCGAWNQLEEKIVHKAAPGRGTLGKTPADDRPRATKLTTVKNSDTPRTTTRSGEF
DRVLGGGIVNGSLILIGGDPGIGKSTILLQTALILAENHKVLYVSGEESLEQIKMRADRITEKPSDLTVFCETNLLYIHE
EIKRSKPDFLIIDSIQTVFHPDVTSAPGSVAQVRESTQSIMNIAKGNNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFE
GDQHHSYRILRAVKNRFGSTNEMGIFEMKAKGLEEVLNPSEIFLEERSKNAPGSAIVATMEGTRAMLVEVQSLVTPTHFH
NPRRMATGVDTNRLSLLMAVLEKSEGMLMQQHDAYIKVAGGVKLDEPAVDLSVIISIASSFQNIAVRGEDCFIGEVGLTG
EIRRVTKIEQRLQEAAKLGFKRAIVPASNLSGVDVPAGIEAIGVKTLRQAIKYAQHKD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=428025 G4D76_RS07070 WP_213810937.1 1197487..1198863(-) (radA) [Jeotgalicoccus sp. WY2]
ATGGCAAAAGCAAAAGTATCATTTGAATGTATGGCATGCGGTTATGAGTCGCCGAAGTGGATGGGTAAATGTCCAAACTG
CGGCGCCTGGAACCAGCTTGAAGAGAAAATTGTACATAAAGCCGCGCCGGGACGCGGTACATTAGGCAAAACACCTGCCG
ATGACCGGCCCCGCGCAACGAAACTGACAACAGTTAAAAATAGTGATACACCACGTACGACAACGCGCTCGGGAGAGTTT
GACCGTGTGCTTGGCGGCGGTATCGTTAACGGTTCGCTTATTTTAATCGGCGGGGACCCGGGTATCGGAAAGTCGACGAT
TTTACTGCAGACAGCATTAATTTTAGCGGAAAACCATAAAGTGCTTTACGTTTCGGGTGAGGAATCGCTTGAACAAATTA
AAATGCGTGCAGACCGTATTACAGAAAAGCCGTCGGACCTGACTGTATTTTGCGAGACGAACTTATTATATATTCACGAA
GAAATTAAAAGATCGAAGCCGGACTTTTTAATTATTGATTCCATCCAGACAGTATTCCATCCGGATGTCACGAGCGCACC
GGGGAGTGTCGCTCAGGTAAGAGAAAGTACGCAGTCTATTATGAACATCGCAAAAGGCAATAATATTGCGACGTTTATCG
TCGGTCACGTGACTAAAGACGGTCAGATTGCAGGGCCGAGACTGCTTGAACACATGGTAGATACCGTGCTGTATTTCGAA
GGGGACCAGCATCATTCATACCGTATTTTGCGTGCTGTAAAGAACCGTTTCGGTTCGACGAACGAAATGGGTATTTTCGA
GATGAAGGCGAAAGGTCTCGAAGAAGTATTGAATCCTTCGGAAATTTTCCTTGAAGAACGTTCGAAAAATGCACCAGGCT
CGGCTATTGTTGCAACGATGGAAGGTACAAGAGCGATGCTTGTTGAAGTTCAGTCACTCGTGACGCCGACTCACTTCCAT
AACCCGAGACGCATGGCGACCGGAGTGGATACAAACCGATTGTCGTTATTAATGGCAGTACTTGAAAAATCGGAAGGAAT
GCTGATGCAGCAGCACGATGCTTATATTAAAGTAGCGGGCGGTGTGAAGCTCGATGAACCGGCTGTCGATTTAAGCGTCA
TTATCAGTATCGCCTCCAGTTTCCAAAATATCGCGGTACGCGGTGAAGACTGCTTTATCGGTGAAGTGGGGCTGACCGGT
GAAATCAGACGGGTAACTAAAATAGAACAGCGTCTGCAGGAAGCGGCGAAGCTCGGTTTTAAGCGCGCAATTGTACCTGC
CTCCAATTTAAGCGGTGTAGATGTACCGGCAGGTATTGAAGCAATCGGCGTGAAAACATTAAGGCAGGCAATTAAATACG
CGCAGCATAAAGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

98.908

0.616
  radA Streptococcus pneumoniae Rx1

57.395

98.908

0.568
  radA Streptococcus pneumoniae D39

57.395

98.908

0.568
  radA Streptococcus pneumoniae R6

57.395

98.908

0.568
  radA Streptococcus pneumoniae TIGR4

57.395

98.908

0.568
  radA Streptococcus mitis SK321

57.395

98.908

0.568
  radA Streptococcus mitis NCTC 12261

57.395

98.908

0.568