Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   G8E09_RS17940 Genome accession   NZ_CP049806
Coordinates   3793396..3794964 (+) Length   522 a.a.
NCBI ID   WP_214286923.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1254     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3788396..3799964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS17920 (G8E09_17910) hom 3788890..3790191 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  G8E09_RS17925 (G8E09_17915) thrC 3790246..3791385 (+) 1140 WP_002048893.1 threonine synthase -
  G8E09_RS17930 (G8E09_17920) pbpG 3791491..3792537 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  G8E09_RS17935 (G8E09_17925) gacA 3792750..3793385 (+) 636 WP_002121174.1 response regulator -
  G8E09_RS17940 (G8E09_17930) pilS 3793396..3794964 (+) 1569 WP_214286923.1 sensor histidine kinase Regulator
  G8E09_RS17945 (G8E09_17935) pilR 3794988..3796400 (+) 1413 WP_005065713.1 sigma-54-dependent transcriptional regulator Regulator
  G8E09_RS17950 (G8E09_17940) ctpA 3796404..3797588 (-) 1185 WP_167564211.1 S41 family peptidase -
  G8E09_RS17955 (G8E09_17945) gpmI 3797604..3799151 (-) 1548 WP_017400161.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59091.62 Da        Isoelectric Point: 6.1805

>NTDB_id=428004 G8E09_RS17940 WP_214286923.1 3793396..3794964(+) (pilS) [Acinetobacter pittii strain A1254]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFLKTLLDEDLFDVK
GSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=428004 G8E09_RS17940 WP_214286923.1 3793396..3794964(+) (pilS) [Acinetobacter pittii strain A1254]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTCAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCTATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCTTTA
TTGGCCTTCTTGTTTTTTGTAGTACACGGAATCGGACAAATTGCAGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTATGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAATTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCCCATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGATAGTGATTCAGAACAGCA
AAACACTTTGCGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAATGACTTCTTAAAAACGTTATTAGATGAAGATTTATTTGATGTTAAA
GGTTCGATACAGCTTAAAATTTCCGATTCATCTTTAAAACTCTTATTCGATGAAAAGCAACTCAGACAAGTGCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

95.019

100

0.95