Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G8E09_RS01665 Genome accession   NZ_CP049806
Coordinates   356462..356923 (+) Length   153 a.a.
NCBI ID   WP_167562963.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351462..361923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01645 (G8E09_01645) - 352843..353730 (+) 888 WP_086399360.1 metal-dependent hydrolase -
  G8E09_RS01650 (G8E09_01650) - 353861..354451 (+) 591 WP_002117090.1 LemA family protein -
  G8E09_RS01655 (G8E09_01655) - 354476..355558 (+) 1083 WP_167562961.1 TPM domain-containing protein -
  G8E09_RS01660 (G8E09_01660) - 355552..356112 (+) 561 WP_167562962.1 TPM domain-containing protein -
  G8E09_RS01665 (G8E09_01665) pilA 356462..356923 (+) 462 WP_167562963.1 pilin Machinery gene
  G8E09_RS01670 (G8E09_01670) - 356983..358296 (+) 1314 WP_167564307.1 O-antigen ligase family protein -
  G8E09_RS01675 (G8E09_01675) - 358402..360030 (+) 1629 WP_167562964.1 O-antigen ligase family protein -
  G8E09_RS01680 (G8E09_01680) bfr 360073..360537 (-) 465 WP_044103194.1 heteropolymeric bacterioferritin subunit Bfr -
  G8E09_RS01685 (G8E09_01685) bfd 360781..360975 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  G8E09_RS19910 - 361078..361155 (+) 78 Protein_324 hypothetical protein -
  G8E09_RS01690 (G8E09_01690) - 361195..361578 (-) 384 WP_002116996.1 RidA family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15461.62 Da        Isoelectric Point: 8.4553

>NTDB_id=427969 G8E09_RS01665 WP_167562963.1 356462..356923(+) (pilA) [Acinetobacter pittii strain A1254]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIAKSQASEAMTIADGLKTNIQTNLQSNSCFSGGATAAVAGTDTVSGK
YGSATITTISGTAAANNLVCGITYTFKTTGVSSKIAAKVLALQTNDNGVLSKAASGTTINDKYLPNSLTVSGS

Nucleotide


Download         Length: 462 bp        

>NTDB_id=427969 G8E09_RS01665 WP_167562963.1 356462..356923(+) (pilA) [Acinetobacter pittii strain A1254]
ATGAATGCACAAAAAGGTTTTACATTAATTGAGCTTATGATCGTGGTTGCCATTATTGGTATTTTGGCGGCAATTGCGAT
TCCTGCTTATCAGGACTATATTGCTAAATCTCAAGCTTCTGAAGCAATGACTATTGCTGATGGTTTGAAAACGAATATTC
AAACTAATCTTCAAAGCAATTCTTGCTTTTCAGGTGGTGCGACAGCAGCTGTCGCTGGAACAGATACTGTGTCAGGTAAA
TATGGTAGTGCTACTATAACAACTATAAGTGGCACTGCTGCTGCAAATAACCTTGTATGCGGTATCACTTATACATTTAA
AACTACAGGTGTTTCTAGTAAAATTGCAGCTAAAGTTCTTGCATTACAAACTAACGATAATGGTGTTTTAAGTAAAGCAG
CTTCTGGTACAACTATTAATGATAAATATTTACCTAACTCATTAACTGTTTCAGGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

60.265

98.693

0.595
  pilA Acinetobacter baumannii strain A118

39.869

100

0.399
  pilE Neisseria gonorrhoeae MS11

36.196

100

0.386
  pilA Pseudomonas aeruginosa PAK

38.514

96.732

0.373
  pilA2 Legionella pneumophila str. Paris

39.583

94.118

0.373
  pilA2 Legionella pneumophila strain ERS1305867

38.889

94.118

0.366