Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   MYY_RS06080 Genome accession   NC_017769
Coordinates   1169547..1170617 (+) Length   356 a.a.
NCBI ID   WP_000817882.1    Uniprot ID   Q7ZAK7
Organism   Streptococcus pneumoniae ST556     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1164547..1175617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYY_RS13740 - 1165519..1165650 (+) 132 WP_088800136.1 LPXTG cell wall anchor domain-containing protein -
  MYY_RS06065 (MYY_1184) ylqF 1165870..1166721 (+) 852 WP_000201286.1 ribosome biogenesis GTPase YlqF -
  MYY_RS06070 (MYY_1185) - 1166708..1167487 (+) 780 WP_000201121.1 ribonuclease HII -
  MYY_RS06075 (MYY_1186) - 1167503..1169053 (+) 1551 WP_000392542.1 ClC family H(+)/Cl(-) exchange transporter -
  MYY_RS06080 (MYY_1187) xerS 1169547..1170617 (+) 1071 WP_000817882.1 tyrosine recombinase XerS Machinery gene
  MYY_RS06085 (MYY_1188) - 1170690..1171679 (-) 990 WP_000873995.1 lipoate--protein ligase -
  MYY_RS06090 (MYY_1189) lpdA 1171743..1173446 (-) 1704 WP_001162912.1 dihydrolipoyl dehydrogenase -
  MYY_RS06095 (MYY_1190) - 1173492..1174535 (-) 1044 WP_000752702.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41171.21 Da        Isoelectric Point: 9.6220

>NTDB_id=42795 MYY_RS06080 WP_000817882.1 1169547..1170617(+) (xerS) [Streptococcus pneumoniae ST556]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=42795 MYY_RS06080 WP_000817882.1 1169547..1170617(+) (xerS) [Streptococcus pneumoniae ST556]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAGGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7ZAK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

100

100

1

Multiple sequence alignment