Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   G8E00_RS14930 Genome accession   NZ_CP049801
Coordinates   3279420..3280988 (+) Length   522 a.a.
NCBI ID   WP_166012580.1    Uniprot ID   A0A6G8RZH1
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3274420..3285988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS14910 (G8E00_14905) thrC 3275502..3276647 (+) 1146 WP_166012576.1 threonine synthase -
  G8E00_RS14915 (G8E00_14910) - 3276756..3277196 (-) 441 WP_166012577.1 pilin -
  G8E00_RS14920 (G8E00_14915) - 3277463..3278524 (-) 1062 WP_166012578.1 serine hydrolase -
  G8E00_RS14925 (G8E00_14920) - 3278747..3279382 (+) 636 WP_166012579.1 response regulator -
  G8E00_RS14930 (G8E00_14925) pilS 3279420..3280988 (+) 1569 WP_166012580.1 PAS domain-containing sensor histidine kinase Regulator
  G8E00_RS14935 (G8E00_14930) - 3281066..3282167 (+) 1102 Protein_2898 sigma-54-dependent transcriptional regulator -
  G8E00_RS16550 - 3282254..3282433 (+) 180 Protein_2899 helix-turn-helix domain-containing protein -
  G8E00_RS14940 (G8E00_14935) - 3282456..3283637 (-) 1182 WP_166225869.1 S41 family peptidase -
  G8E00_RS14945 (G8E00_14940) gpmI 3283676..3285223 (-) 1548 WP_166225872.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59432.90 Da        Isoelectric Point: 7.4025

>NTDB_id=427924 G8E00_RS14930 WP_166012580.1 3279420..3280988(+) (pilS) [Acinetobacter shaoyimingii strain 323-1]
MSPKVSVPIFQTIYRLGISYTNYRVVLAFSLTLLFLLTINIQTDYYQYPNLYFYSLIAYIGSSIIQNVLLRYFHHGITKQ
FLALFYIDLIFLSSLSFALGGPNISIGLLFVIAVFAANFLLSKNQALVITLIAVISVIYQQLFGNLFSITTLNNIGNSAL
LGALFFVFYGIGQVSIQRFQVLESLNTHQSNELFKLQNINRYILEQIEVGYLVLDDHFKIIVINPAACSLLGISALYSHQ
PFHLMTFQSDLYNMLNTTLISDGHRFQFKSSQSSYTVDVRVQKLIVPHQALTLLILEDAQKLNQKVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELSQQSDVEQQHILREMISKQANRIDNIIKDTLDMAKNRKVFSTKINLHLFMHEFLQQDVYDIK
DKILLNISDRPNIDFDESQLRQVLINLVRNAIRHNAADAEHIEINIYPKLNFIYIDVVDFGHGIDKSDQSKLFQPFFSTE
INGTGLGLYLSHSICEANQAKLIYVEQKKQGACFRIECPIKD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=427924 G8E00_RS14930 WP_166012580.1 3279420..3280988(+) (pilS) [Acinetobacter shaoyimingii strain 323-1]
ATGTCGCCTAAGGTCTCCGTACCTATATTTCAAACAATTTACCGTTTAGGCATTTCATATACCAACTATCGAGTCGTTTT
GGCGTTTAGCTTAACCTTACTCTTTTTACTCACCATTAATATTCAAACCGATTATTACCAATATCCAAACTTATATTTTT
ATTCACTTATTGCATATATCGGTAGCAGTATTATACAAAATGTATTGCTCCGATATTTTCATCACGGCATTACCAAACAG
TTTTTAGCCCTATTTTATATTGACCTCATTTTTTTGAGTTCATTGTCTTTTGCATTGGGTGGTCCCAATATTTCTATTGG
TTTACTGTTTGTCATTGCTGTATTTGCAGCAAACTTTTTGCTCAGCAAAAATCAGGCATTGGTGATCACACTTATTGCTG
TCATTAGTGTGATTTACCAACAACTGTTTGGAAATCTATTTTCAATTACCACGTTAAATAATATTGGTAACAGTGCGCTT
TTAGGGGCTTTATTTTTTGTCTTTTATGGAATTGGACAAGTCTCCATTCAACGCTTTCAAGTTTTAGAATCATTGAATAC
ACATCAATCCAATGAATTATTCAAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGTGGGTTATTTGGTAC
TCGATGATCATTTTAAAATCATCGTGATCAATCCAGCTGCCTGTTCGTTATTGGGAATTTCAGCGCTGTATAGCCATCAA
CCGTTTCATCTGATGACTTTTCAATCTGACCTTTATAACATGTTGAATACAACGTTAATTTCTGATGGTCATCGCTTTCA
GTTTAAGTCTTCTCAGTCATCTTATACTGTTGATGTTCGTGTACAAAAACTGATTGTGCCTCATCAGGCACTGACTTTAC
TGATTTTAGAAGATGCACAAAAACTCAATCAAAAGGTTCAACAATTAAAATTGGCTGCTTTAGGCCAACTCTCGGCCAGT
ATAGCCCATGAAATTCGCAATCCTCTTGCGGCGATCGTACAAGCCAATGAACTTAGCCAACAAAGCGATGTTGAACAACA
ACACATTTTAAGGGAAATGATCTCAAAACAAGCCAATCGTATTGATAATATTATTAAAGATACTTTAGATATGGCGAAGA
ACAGGAAAGTCTTTTCCACCAAAATTAATTTACATCTCTTTATGCATGAATTTCTTCAACAAGATGTTTATGACATTAAA
GATAAAATTTTGCTGAATATTTCAGATCGTCCCAATATTGATTTTGATGAATCACAACTACGTCAAGTACTGATTAATTT
AGTACGCAATGCCATTCGCCATAATGCAGCTGATGCCGAGCATATTGAGATTAATATCTATCCAAAACTCAACTTTATCT
ACATTGATGTGGTCGATTTTGGTCATGGTATAGATAAATCTGATCAATCAAAACTATTTCAGCCTTTTTTTAGTACCGAA
ATTAATGGAACTGGTTTAGGATTGTATTTATCTCATAGTATTTGTGAAGCAAATCAAGCGAAACTGATCTATGTAGAGCA
AAAAAAACAAGGGGCATGTTTTAGAATAGAGTGCCCTATTAAAGATTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RZH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.556

97.893

0.554