Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   G8E00_RS14775 Genome accession   NZ_CP049801
Coordinates   3249348..3249671 (-) Length   107 a.a.
NCBI ID   WP_166012553.1    Uniprot ID   A0A6G8RZ13
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3244348..3254671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS14755 (G8E00_14750) - 3244469..3245182 (-) 714 WP_166225814.1 FHA domain-containing protein -
  G8E00_RS14760 (G8E00_14755) gspD 3245250..3247547 (-) 2298 WP_166225817.1 type II secretion system secretin GspD -
  G8E00_RS14765 (G8E00_14760) - 3247588..3248439 (-) 852 WP_166225820.1 type II secretion system protein N -
  G8E00_RS14770 (G8E00_14765) gspN 3248439..3249182 (-) 744 WP_166225823.1 type II secretion system protein N -
  G8E00_RS14775 (G8E00_14770) hns 3249348..3249671 (-) 324 WP_166012553.1 H-NS family nucleoid-associated regulatory protein Regulator
  G8E00_RS14780 (G8E00_14775) - 3249813..3250250 (-) 438 WP_166225826.1 thioesterase family protein -
  G8E00_RS14785 (G8E00_14780) - 3250259..3251452 (-) 1194 WP_166225829.1 heme biosynthesis protein HemY -
  G8E00_RS14790 (G8E00_14785) - 3251457..3252296 (-) 840 WP_166225832.1 hypothetical protein -
  G8E00_RS14795 (G8E00_14790) - 3252293..3253075 (-) 783 WP_166225835.1 uroporphyrinogen-III synthase -
  G8E00_RS14800 (G8E00_14795) hemC 3253085..3254005 (-) 921 WP_166226579.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12197.84 Da        Isoelectric Point: 8.3907

>NTDB_id=427922 G8E00_RS14775 WP_166012553.1 3249348..3249671(-) (hns) [Acinetobacter shaoyimingii strain 323-1]
MPDISNLSVEELKKLTAEAEALIESKKGQAVEDAYNEIVKIAESVGYTLEQFIEYGSHKRKKTTRKAVEPRYRNKNNSAE
TWTGRGKQPRWLVAELEKGAKLEDFVI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=427922 G8E00_RS14775 WP_166012553.1 3249348..3249671(-) (hns) [Acinetobacter shaoyimingii strain 323-1]
ATGCCAGATATTAGCAATCTTTCAGTTGAAGAATTGAAAAAATTAACAGCTGAAGCTGAAGCTTTGATTGAATCTAAAAA
AGGTCAAGCTGTTGAAGATGCTTATAATGAAATTGTTAAAATTGCTGAATCTGTAGGTTATACATTAGAACAGTTTATTG
AATACGGTTCTCATAAGCGTAAGAAAACAACACGTAAAGCTGTAGAGCCACGTTATCGTAACAAAAACAACAGCGCTGAA
ACTTGGACTGGTCGTGGTAAACAACCACGTTGGTTGGTTGCAGAGTTAGAGAAAGGTGCAAAACTAGAAGATTTTGTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8RZ13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.358

99.065

0.766