Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   G8E00_RS14325 Genome accession   NZ_CP049801
Coordinates   3158186..3158698 (-) Length   170 a.a.
NCBI ID   WP_320077573.1    Uniprot ID   -
Organism   Acinetobacter shaoyimingii strain 323-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3153186..3163698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E00_RS14315 (G8E00_14310) - 3156470..3157264 (-) 795 WP_166225684.1 PilX N-terminal domain-containing pilus assembly protein -
  G8E00_RS14320 (G8E00_14315) pilW 3157261..3158184 (-) 924 WP_166225687.1 PilW family protein Machinery gene
  G8E00_RS14325 (G8E00_14320) pilV 3158186..3158698 (-) 513 WP_320077573.1 type IV pilus modification protein PilV Machinery gene
  G8E00_RS14330 (G8E00_14325) - 3158698..3159186 (-) 489 WP_166225693.1 Tfp pilus assembly protein FimT/FimU -
  G8E00_RS14335 (G8E00_14330) ispH 3159325..3160278 (-) 954 WP_166225696.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G8E00_RS14340 (G8E00_14335) gmk 3160412..3161032 (+) 621 WP_166011179.1 guanylate kinase -
  G8E00_RS14345 (G8E00_14340) rpoZ 3161108..3161389 (+) 282 WP_166011181.1 DNA-directed RNA polymerase subunit omega -
  G8E00_RS14350 (G8E00_14345) - 3161592..3163694 (+) 2103 WP_166011183.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18499.34 Da        Isoelectric Point: 8.2099

>NTDB_id=427918 G8E00_RS14325 WP_320077573.1 3158186..3158698(-) (pilV) [Acinetobacter shaoyimingii strain 323-1]
MNSNQTGVGMVEVLVALIILAVGVLGFAALQFRAVEASGESLARSQATTLLRGLTESIRANKSGQEFYAEEVQKYSNMTT
KPTIQTKCLNTSCSAKNMAAYDAYLVGKTAYQLGINITMTNCPGVQSIERKCLFAVWKDTKITDKTNYSDCMSSNGVYKP
LANCIMMEAY

Nucleotide


Download         Length: 513 bp        

>NTDB_id=427918 G8E00_RS14325 WP_320077573.1 3158186..3158698(-) (pilV) [Acinetobacter shaoyimingii strain 323-1]
ATGAATTCCAATCAGACTGGGGTTGGAATGGTTGAGGTTTTAGTGGCTTTAATCATTCTTGCCGTTGGTGTTTTAGGTTT
TGCAGCCCTTCAATTCCGGGCGGTGGAGGCGAGTGGTGAATCCTTGGCTCGATCACAGGCTACGACGCTTTTAAGAGGCT
TAACTGAAAGTATAAGAGCGAATAAATCTGGACAAGAATTCTACGCTGAGGAAGTTCAAAAATATTCCAATATGACCACT
AAACCAACAATACAAACTAAATGTTTAAATACGAGTTGTAGTGCGAAAAATATGGCTGCTTACGATGCATATTTGGTTGG
GAAAACTGCTTATCAGCTTGGCATAAATATTACGATGACGAATTGCCCAGGTGTTCAATCCATTGAAAGAAAGTGTTTGT
TTGCAGTTTGGAAAGATACAAAAATAACCGATAAAACAAATTATAGCGATTGTATGAGTTCCAATGGTGTTTATAAACCG
CTTGCAAATTGCATAATGATGGAAGCTTATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

48.295

100

0.5
  pilV Acinetobacter baylyi ADP1

37.143

100

0.382