NTDB

Overview

Name	tonB2	Type	Machinery gene
Locus tag	G8E00_RS13845	Genome accession	NZ_CP049801
Coordinates	3062219..3063103 (-)	Length	294 a.a.
NCBI ID	WP_166225499.1	Uniprot ID	A0A6G8RYK1
Organism	Acinetobacter shaoyimingii strain 323-1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3057219..3068103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G8E00_RS13820 (G8E00_13815)	miaB	3057458..3058912 (+)	1455	WP_166225487.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
G8E00_RS13825 (G8E00_13820)	-	3058952..3060046 (+)	1095	WP_166010999.1	PhoH family protein	-
G8E00_RS13830 (G8E00_13825)	ybeY	3060107..3060589 (+)	483	WP_166225490.1	rRNA maturation RNase YbeY	-
G8E00_RS13835 (G8E00_13830)	-	3060784..3061896 (+)	1113	WP_166225493.1	mechanosensitive ion channel family protein	-
G8E00_RS13840 (G8E00_13835)	-	3061898..3062194 (+)	297	WP_166225496.1	antibiotic biosynthesis monooxygenase	-
G8E00_RS13845 (G8E00_13840)	tonB2	3062219..3063103 (-)	885	WP_166225499.1	energy transducer TonB	Machinery gene
G8E00_RS13850 (G8E00_13845)	-	3063335..3064009 (+)	675	WP_166225502.1	hypothetical protein	-
G8E00_RS13855 (G8E00_13850)	-	3064157..3064873 (+)	717	WP_166225505.1	DUF3108 domain-containing protein	-
G8E00_RS13860 (G8E00_13855)	-	3064967..3065542 (+)	576	WP_166225508.1	xanthine phosphoribosyltransferase	-
G8E00_RS13865 (G8E00_13860)	-	3065601..3066584 (-)	984	WP_166225511.1	aliphatic sulfonate ABC transporter substrate-binding protein	-
G8E00_RS13870 (G8E00_13865)	-	3066946..3067359 (+)	414	WP_166225514.1	hypothetical protein	-
G8E00_RS13875 (G8E00_13870)	wrbA	3067408..3068007 (-)	600	WP_166225517.1	NAD(P)H:quinone oxidoreductase	-

Sequence

Protein

Download Length: 294 a.a. Molecular weight: 33689.57 Da Isoelectric Point: 8.3399

                                >NTDB_id=427916 G8E00_RS13845 WP_166225499.1 3062219..3063103(-) (tonB2) [Acinetobacter shaoyimingii strain 323-1]

MIKKIMEFSKLTQQWWDDQLFLLAAGVAVIIHVLFISVHFEMPPEHDLQNKEIAVTLRPSNTKINEADFFAQEDQEGSGA

YRHKYRMTSEMPAQTQDLSAGDAQMEALEKIQQQRELKFEEKVLMTVLSWKKQASEKERKKALDELQSQFEAKAAMVASL

EAQYLKKNQNFSRQQKIQTVDGVQAKKLASAGYLDKFREKVEMYGNRYYPELAKQQRLAGEVRLMVILNASGGIRAIRLI

ESSGHSILDEAAKNSVRKAAPFGAFDANMRKDISELRIVRTWKFDPADAEFEVH

Nucleotide

Download Length: 885 bp

                                >NTDB_id=427916 G8E00_RS13845 WP_166225499.1 3062219..3063103(-) (tonB2) [Acinetobacter shaoyimingii strain 323-1]

ATGATAAAAAAAATAATGGAATTTTCCAAGTTGACTCAACAGTGGTGGGATGACCAGCTCTTTTTACTTGCTGCTGGTGT

AGCTGTCATTATTCATGTGCTTTTTATCTCTGTACATTTTGAAATGCCACCCGAACATGATCTACAGAACAAAGAAATTG

CGGTGACTTTAAGACCGAGCAATACCAAGATTAATGAAGCTGATTTCTTTGCTCAAGAAGATCAAGAAGGCAGTGGGGCA

TATCGTCATAAATACCGTATGACTTCAGAAATGCCTGCGCAAACTCAAGATCTGAGTGCTGGCGATGCACAAATGGAAGC

GTTGGAAAAAATTCAACAACAGCGTGAGTTAAAATTTGAAGAAAAAGTGCTGATGACTGTTTTGAGCTGGAAAAAACAGG

CATCGGAAAAAGAACGTAAAAAAGCCTTAGATGAACTACAAAGCCAATTTGAAGCCAAAGCGGCGATGGTGGCAAGTCTT

GAAGCGCAATATTTAAAAAAGAATCAAAATTTTAGTCGCCAACAAAAAATTCAAACGGTCGATGGAGTACAAGCCAAAAA

ACTCGCATCAGCAGGCTATCTAGATAAATTCAGAGAAAAAGTCGAAATGTATGGGAATCGCTATTATCCAGAACTAGCAA

AACAACAGCGTTTAGCTGGTGAAGTTCGTTTAATGGTGATTTTAAATGCCTCAGGAGGAATACGTGCGATTCGATTAATT

GAAAGTTCAGGGCACAGTATTTTAGACGAAGCAGCTAAGAATTCAGTGCGTAAAGCAGCACCGTTTGGTGCTTTTGATGC

CAATATGCGAAAAGATATTTCTGAACTTCGTATTGTAAGAACTTGGAAGTTCGATCCAGCTGATGCAGAGTTTGAAGTAC

ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-271)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6G8RYK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
tonB2	Acinetobacter baumannii D1279779	69.751	95.578	0.667

Detailed information NTG0427916