Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   G7090_RS20840 Genome accession   NZ_CP049786
Coordinates   4361006..4362439 (+) Length   477 a.a.
NCBI ID   WP_106994838.1    Uniprot ID   -
Organism   Leclercia sp. 29361     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4356006..4367439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7090_RS20810 (G7090_20810) - 4356573..4357550 (+) 978 WP_166184233.1 calcium/sodium antiporter -
  G7090_RS20815 (G7090_20815) kdsD 4357564..4358550 (+) 987 WP_166184236.1 arabinose-5-phosphate isomerase KdsD -
  G7090_RS20820 (G7090_20820) kdsC 4358565..4359131 (+) 567 WP_106994894.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  G7090_RS20825 (G7090_20825) lptC 4359128..4359703 (+) 576 WP_106994835.1 LPS export ABC transporter periplasmic protein LptC -
  G7090_RS20830 (G7090_20830) lptA 4359672..4360226 (+) 555 WP_106994836.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  G7090_RS20835 (G7090_20835) lptB 4360233..4360958 (+) 726 WP_106994837.1 LPS export ABC transporter ATP-binding protein -
  G7090_RS20840 (G7090_20840) rpoN/rpoN1 4361006..4362439 (+) 1434 WP_106994838.1 RNA polymerase factor sigma-54 Machinery gene
  G7090_RS20845 (G7090_20845) hpf 4362462..4362749 (+) 288 WP_106994839.1 ribosome hibernation promoting factor -
  G7090_RS20850 (G7090_20850) ptsN 4362832..4363323 (+) 492 WP_039031625.1 PTS IIA-like nitrogen regulatory protein PtsN -
  G7090_RS20855 (G7090_20855) rapZ 4363369..4364223 (+) 855 WP_106994840.1 RNase adapter RapZ -
  G7090_RS20860 (G7090_20860) npr 4364220..4364492 (+) 273 WP_047058971.1 PTS phosphocarrier protein NPr -
  G7090_RS20865 (G7090_20865) mtgA 4364489..4365214 (-) 726 WP_371811733.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  G7090_RS20870 (G7090_20870) elbB 4365211..4365864 (-) 654 WP_166184238.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54168.98 Da        Isoelectric Point: 4.3407

>NTDB_id=427817 G7090_RS20840 WP_106994838.1 4361006..4362439(+) (rpoN/rpoN1) [Leclercia sp. 29361]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVETQQTQDTENLDSVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVSLDD
ILESIGDDEIDLEEVEAVLKRVQRFDPVGVAARDLRDCLLIQLSQFVKETPWLEEARLIVSEHLDLLANHDFRSLMRVTR
LKEEILKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGLWVVELNSDSIPRLQINQHYASMCTSSRNDSDNQFIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=427817 G7090_RS20840 WP_106994838.1 4361006..4362439(+) (rpoN/rpoN1) [Leclercia sp. 29361]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAGCTGGCAATGACGCCGCAGCTCCAACAGGCCATTCGTCTGTTGCA
GCTGTCGACGCTAGAACTCCAGCAGGAGCTCCAGCAAGCGCTGGACAGCAATCCCCTGCTTGAGCAAACCGATCTTCACG
ACGAGGTAGAAACTCAGCAAACTCAGGACACCGAAAATCTCGACAGCGTTGATGCGCTGGAGCAAAAAGAGATGCCTGAC
GAGCTTCCTCTGGATGCCAGCTGGGATGAGATCTACACCGCCGGCACGCCATCCGGCACGCGCGCAGACTACCAGGATGA
TGAATTACCGGTGTATCAGGGCGAGACCACCCAATCGCTGCAGGATTACCTGATGTGGCAGGTGGAGCTCACGCCGTTTT
CCGATACCGATCGCGCCATCGCTACCTCCATTGTCGATGCCGTCGATGAGACCGGCTATTTGACCGTGTCGCTGGACGAT
ATTCTGGAAAGCATCGGTGATGATGAGATCGATCTTGAAGAGGTCGAAGCGGTTCTGAAGCGTGTTCAGCGTTTCGATCC
GGTCGGCGTCGCAGCACGCGATTTACGTGACTGCCTGCTGATTCAGCTTTCGCAGTTCGTTAAAGAGACGCCGTGGCTGG
AAGAGGCTCGCCTGATCGTTAGCGAGCATCTGGATCTGCTGGCCAACCACGACTTCCGCTCATTGATGCGCGTAACGCGC
CTGAAAGAAGAGATCCTGAAAGAAGCGGTTAATCTGATTCAGTCGCTGGATCCACGTCCGGGGCAGTCTATCCAGACCAG
CGAGCCCGAGTACGTTATTCCCGATGTGCTGGTGCGCAAGCATAACGGCCTGTGGGTTGTGGAACTGAATTCCGACAGCA
TCCCGCGTCTGCAAATCAATCAGCACTACGCCTCGATGTGCACCAGCTCGCGCAATGATTCGGATAATCAGTTTATCCGC
AGCAATCTGCAGGAGGCACGCTGGCTGATCAAAAGCCTCGAGAGCCGCAATGACACCCTGCTGCGCGTCAGCCGCTGCAT
CGTCGAACAACAGCAGGCGTTTTTTGAGCAGGGTGAAGAATTTATGAAGCCGATGGTGCTGGCCGATATCGCCCAGGCCG
TCGAGATGCATGAATCGACGATTTCCCGCGTGACGACGCAGAAGTATCTGCACAGTCCGCGCGGTATTTTTGAGCTTAAG
TATTTTTTCTCCAGCCACGTCAATACCGAAGGCGGCGGCGAAGCCTCGTCGACGGCCATTCGGGCGCTGGTGAAAAAATT
GATCGCCGCGGAAAACCCCGCGAAACCACTGAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAAGGTATCATGGTGG
CACGCCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAACTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482