Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G7090_RS07965 Genome accession   NZ_CP049786
Coordinates   1703116..1703742 (+) Length   208 a.a.
NCBI ID   WP_166182050.1    Uniprot ID   -
Organism   Leclercia sp. 29361     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1698116..1708742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7090_RS07945 (G7090_07945) - 1698510..1700270 (-) 1761 WP_166182047.1 Lon protease family protein -
  G7090_RS07950 (G7090_07950) matP 1700457..1700912 (+) 456 WP_106992620.1 macrodomain Ter protein MatP -
  G7090_RS07955 (G7090_07955) ompA 1700979..1702034 (-) 1056 WP_166182048.1 porin OmpA -
  G7090_RS07960 (G7090_07960) sulA 1702389..1702898 (-) 510 WP_166182049.1 SOS-induced cell division inhibitor SulA -
  G7090_RS07965 (G7090_07965) sxy/tfoX 1703116..1703742 (+) 627 WP_166182050.1 TfoX/Sxy family DNA transformation protein Regulator
  G7090_RS07970 (G7090_07970) yccS 1703727..1705862 (-) 2136 WP_166182051.1 YccS family putative transporter -
  G7090_RS07975 (G7090_07975) - 1705881..1706327 (-) 447 WP_106992625.1 YccF domain-containing protein -
  G7090_RS07980 (G7090_07980) helD 1706451..1708505 (+) 2055 WP_166182052.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24141.63 Da        Isoelectric Point: 7.2889

>NTDB_id=427806 G7090_RS07965 WP_166182050.1 1703116..1703742(+) (sxy/tfoX) [Leclercia sp. 29361]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAQYCVKNTSSYLTLVKRGRPILLN
YYRVDEALWQDQDKLLQLSSFALEAARRERRERYKRDRLKDLPNLTFQLEILLNEAGITDEEALRALGAEQCWLKIRELN
RHLSYKVLFALEGAIVGLHEAALPEIRRQELVEWYKRLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=427806 G7090_RS07965 WP_166182050.1 1703116..1703742(+) (sxy/tfoX) [Leclercia sp. 29361]
ATGAAAAAGTTATCTTATGAACGGATCTATCAATCTACGAAATATCTTTCACCCCTTGGTGAAGTCCAGCATCGCGCGCT
GTTTGGCGGGTATACCCTGGCGGTGGATGACGCGGTCTTTGCGATGGTATCTGACGGTGAGTTATACCTGCGCGCCTGTG
AAGAGAGCGCACAGTATTGCGTCAAAAATACCTCCTCTTACTTAACGCTGGTTAAGAGGGGGCGCCCGATTTTGCTGAAT
TACTACCGCGTGGATGAGGCGCTCTGGCAGGATCAGGATAAGCTTCTGCAGCTCTCCTCCTTTGCCCTCGAAGCCGCACG
ACGGGAGCGCCGCGAGCGGTACAAGCGCGACAGGCTGAAAGATTTACCCAATCTCACCTTTCAGCTTGAGATCCTGCTGA
ACGAAGCGGGCATCACCGACGAAGAGGCGTTACGCGCCCTCGGCGCCGAGCAGTGCTGGCTGAAGATCAGAGAACTTAAC
CGGCATCTGAGCTACAAGGTGCTGTTTGCGCTGGAGGGGGCCATCGTCGGGCTGCACGAAGCGGCCCTCCCGGAGATCAG
ACGCCAGGAGCTGGTGGAGTGGTACAAAAGGCTGCCCGTGGAGAACAGCCCTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.512

98.558

0.587