Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G7035_RS12285 Genome accession   NZ_CP049783
Coordinates   2764399..2765352 (+) Length   317 a.a.
NCBI ID   WP_019688644.1    Uniprot ID   A0A378Y424
Organism   Paenibacillus polymyxa strain DSM 36     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2759399..2770352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7035_RS12270 (G7035_12290) - 2761694..2762371 (-) 678 WP_017425557.1 ABC transporter ATP-binding protein -
  G7035_RS12275 (G7035_12295) - 2762479..2763396 (-) 918 WP_019688646.1 HAMP domain-containing sensor histidine kinase -
  G7035_RS12280 (G7035_12300) - 2763397..2764074 (-) 678 WP_019688645.1 response regulator transcription factor -
  G7035_RS12285 (G7035_12305) ceuB 2764399..2765352 (+) 954 WP_019688644.1 ABC transporter permease Machinery gene
  G7035_RS12290 (G7035_12310) - 2765342..2766292 (+) 951 WP_019688643.1 iron chelate uptake ABC transporter family permease subunit -
  G7035_RS12295 (G7035_12315) - 2766286..2767044 (+) 759 WP_019688642.1 ABC transporter ATP-binding protein -
  G7035_RS12300 (G7035_12320) - 2767057..2768037 (+) 981 WP_019688641.1 siderophore ABC transporter substrate-binding protein -
  G7035_RS12305 (G7035_12325) - 2768070..2768813 (+) 744 WP_019688640.1 alpha/beta hydrolase-fold protein -
  G7035_RS12310 (G7035_12330) - 2768972..2769883 (+) 912 WP_019688639.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34704.67 Da        Isoelectric Point: 9.9012

>NTDB_id=427783 G7035_RS12285 WP_019688644.1 2764399..2765352(+) (ceuB) [Paenibacillus polymyxa strain DSM 36]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=427783 G7035_RS12285 WP_019688644.1 2764399..2765352(+) (ceuB) [Paenibacillus polymyxa strain DSM 36]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACTCGGAACCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTATTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCTAATTTAGGCG
TACATTACAAGCGCACTGTCAATGTTGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTCGGGACG
ATTCCCTTTTTAGGACTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAGATTTCTGTAG
GGCTTACGGTTGGTGTAATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378Y424

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.159

99.369

0.498