Detailed information NTG0042778

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HJ37_RS13660
• Genome accession: NC_016445
• Coordinates: 2975770..2976777 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae O1 str. 2010EL-1786
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2970770..2981777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HJ37_RS13625 (Vch1786_I2833)	ftsB	2970821..2971105 (+)	285	WP_001263189.1	cell division protein FtsB	-
HJ37_RS13630 (Vch1786_I2834)	ispD	2971102..2971800 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HJ37_RS13635 (Vch1786_I2835)	ispF	2971797..2972273 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HJ37_RS13640 (Vch1786_I2836)	truD	2972303..2973388 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
HJ37_RS13645 (Vch1786_I2837)	surE	2973390..2974142 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HJ37_RS13650 (Vch1786_I2838)	-	2974135..2974761 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HJ37_RS13655 (Vch1786_I2839)	nlpD	2974761..2975696 (+)	936	WP_000177568.1	murein hydrolase activator NlpD	-
HJ37_RS13660 (Vch1786_I2840)	rpoS	2975770..2976777 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
HJ37_RS13665 (Vch1786_I2841)	mutS	2976870..2979458 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
HJ37_RS13670 (Vch1786_I2842)	cysM	2979726..2980613 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=42778 HJ37_RS13660 WP_000116737.1 2975770..2976777(+) (rpoS) [Vibrio cholerae O1 str. 2010EL-1786]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=42778 HJ37_RS13660 WP_000116737.1 2975770..2976777(+) (rpoS) [Vibrio cholerae O1 str. 2010EL-1786]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1