Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   G7X27_RS12100 Genome accession   NZ_CP049741
Coordinates   2518317..2518931 (-) Length   204 a.a.
NCBI ID   WP_032873955.1    Uniprot ID   -
Organism   Bacillus velezensis strain UB2017     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2513317..2523931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7X27_RS12070 rpsT 2513620..2513886 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  G7X27_RS12075 holA 2513903..2514944 (-) 1042 Protein_2341 DNA polymerase III subunit delta -
  G7X27_RS12080 - 2514984..2515135 (-) 152 Protein_2342 hypothetical protein -
  G7X27_RS12085 - 2515176..2515310 (+) 135 WP_003152870.1 YqzM family protein -
  G7X27_RS12090 comEC 2515329..2517680 (-) 2352 WP_032873958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G7X27_RS12095 - 2517681..2518250 (-) 570 WP_003152868.1 ComE operon protein 2 -
  G7X27_RS12100 comEA 2518317..2518931 (-) 615 WP_032873955.1 helix-hairpin-helix domain-containing protein Machinery gene
  G7X27_RS12105 comER 2518990..2519811 (+) 822 WP_012118027.1 late competence protein ComER -
  G7X27_RS12110 - 2519880..2520617 (-) 738 WP_032873951.1 class I SAM-dependent methyltransferase -
  G7X27_RS12115 rsfS 2520614..2520970 (-) 357 WP_007408260.1 ribosome silencing factor -
  G7X27_RS12120 yqeK 2520974..2521549 (-) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  G7X27_RS12125 - 2521539..2522108 (-) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  G7X27_RS12130 yhbY 2522119..2522409 (-) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -
  G7X27_RS12135 aroE 2522403..2523245 (-) 843 WP_032873946.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22265.47 Da        Isoelectric Point: 6.4940

>NTDB_id=427558 G7X27_RS12100 WP_032873955.1 2518317..2518931(-) (comEA) [Bacillus velezensis strain UB2017]
MTKAMMTERLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDLKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=427558 G7X27_RS12100 WP_032873955.1 2518317..2518931(-) (comEA) [Bacillus velezensis strain UB2017]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATTTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAACGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA Latilactobacillus sakei subsp. sakei 23K

31.897

100

0.363