Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G8S20_RS14750 Genome accession   NZ_CP049739
Coordinates   2985409..2986023 (-) Length   204 a.a.
NCBI ID   WP_048212109.1    Uniprot ID   A0A9Q7ZQA3
Organism   Citrobacter sp. SX212     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2980409..2991023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8S20_RS14735 (G8S20_14710) helD 2980633..2982687 (-) 2055 WP_253685434.1 DNA helicase IV -
  G8S20_RS14740 (G8S20_14715) - 2982813..2983259 (+) 447 WP_005123514.1 YccF domain-containing protein -
  G8S20_RS14745 (G8S20_14720) yccS 2983278..2985431 (+) 2154 WP_253685436.1 YccS family putative transporter -
  G8S20_RS14750 (G8S20_14725) sxy/tfoX 2985409..2986023 (-) 615 WP_048212109.1 TfoX/Sxy family DNA transformation protein Regulator
  G8S20_RS14755 (G8S20_14730) sulA 2986240..2986749 (+) 510 WP_040231828.1 SOS-induced cell division inhibitor SulA -
  G8S20_RS14760 (G8S20_14735) ompA 2987105..2988154 (+) 1050 WP_048212110.1 porin OmpA -
  G8S20_RS14765 (G8S20_14740) matP 2988253..2988705 (-) 453 WP_005123520.1 macrodomain Ter protein MatP -
  G8S20_RS14770 (G8S20_14745) - 2988891..2990651 (+) 1761 WP_048212112.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23336.10 Da        Isoelectric Point: 9.6920

>NTDB_id=427473 G8S20_RS14750 WP_048212109.1 2985409..2986023(-) (sxy/tfoX) [Citrobacter sp. SX212]
MKKLSYARIYKSQEYLASLGTIRYRSLFGGYSLTVEDTVFAMVASGELYLRACEQSAQYCVKHSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSRYSLDAALKEKQSRFAQHRLRGLPNMTFHLETLLNEAGIKDESTLRMLGAKMCWLKLRQVN
PALTVKILYALEGAIGGIHEAALPAIRRQELVEWVSSLTPEPVY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=427473 G8S20_RS14750 WP_048212109.1 2985409..2986023(-) (sxy/tfoX) [Citrobacter sp. SX212]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGCGTCATTGGGGACTATTCGTTACCGATCGCT
GTTTGGGGGTTATAGCCTGACGGTTGAGGACACGGTATTCGCCATGGTCGCCAGTGGCGAGTTATATCTTCGGGCCTGTG
AACAGAGTGCGCAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACATTTATAAAACGTGGACGTCCGGTGGTGCTCAAT
TATTATCAGGTGAACGATACGCTGTGGCAAAACCAGCAACAACTGGTGTCGCTATCACGGTATTCACTGGATGCGGCGTT
AAAAGAAAAGCAAAGTCGTTTTGCACAGCATCGCCTGCGTGGACTGCCGAACATGACATTCCATCTGGAAACCCTGCTGA
ATGAAGCAGGTATAAAAGATGAAAGCACATTACGCATGTTGGGGGCAAAAATGTGCTGGTTGAAACTGCGACAGGTTAAT
CCCGCCCTGACGGTGAAAATACTCTATGCCCTTGAAGGCGCAATTGGGGGAATTCATGAGGCGGCGCTCCCGGCGATTCG
TCGCCAGGAGCTTGTGGAGTGGGTGAGTTCTCTTACGCCTGAACCGGTGTACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.637

98.529

0.716