Detailed information NTG0427335

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: G8C43_RS09290
• Genome accession: NZ_CP049714
• Coordinates: 2166023..2167378 (-)
• Length: 451 a.a.
• NCBI ID: WP_166005607.1
• Uniprot ID: -
• Organism: Apibacter sp. B2966
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2161023..2172378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G8C43_RS09260 (G8C43_09260)	lptB	2161137..2161865 (+)	729	WP_166005603.1	LPS export ABC transporter ATP-binding protein	-
G8C43_RS09265 (G8C43_09265)	-	2161868..2162389 (+)	522	WP_166005604.1	TlpA family protein disulfide reductase	-
G8C43_RS09270 (G8C43_09270)	-	2162397..2162972 (-)	576	WP_166005605.1	DUF3109 family protein	-
G8C43_RS09275 (G8C43_09275)	-	2163138..2164406 (+)	1269	WP_160566430.1	NAD(P)/FAD-dependent oxidoreductase	-
G8C43_RS09280 (G8C43_09280)	-	2164443..2164850 (-)	408	WP_166005606.1	polymer-forming cytoskeletal protein	-
G8C43_RS10050 (G8C43_09285)	-	2164891..2165757 (-)	867	WP_160542592.1	M23 family metallopeptidase	-
G8C43_RS09290 (G8C43_09290)	radA	2166023..2167378 (-)	1356	WP_166005607.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 49972.44 Da
• Isoelectric Point: 6.1917

>NTDB_id=427335 G8C43_RS09290 WP_166005607.1 2166023..2167378(-) (radA) [Apibacter sp. B2966]
MAKAKTTFFCQNCGTQYSQWLGQCKVCGEWNTIVEEVIEKSSANSISSLSSSSSKNKIYKIHEIETTDEYRILSNDSELD
HLLGGGIVPGSVILIGGEPGIGKSTLLLQISLQIPKKVLYVSGEESSNQIKMRSDRLDISNSECYILTETSTQKILKKAH
ELQPELLVIDSIQTLHSSYIESSPGSISQIRECASELIKYAKETSTPVFLIGHITKEGSIAGPKILEHMVDVVLQFEGDR
NYVYRLLRANKNRYGSTSELGIYEMFSSGLKQVKNPSEILVSKKDESLSGNAIAVTLEGLRPMLVEIQALVSTAVYGTPQ
RVTTGFDVKRLNMLLAVLEKRAGFHLGTKDVFLNVTGGIRVDDPAIDLAVICAILSSNEDISLPDNCLFAGEIGLSGEIR
PVNRIEQRIIEAEKLGYDVIFISKYNKIDRKKYNIRVEMVSKVEDVYKLLF

Nucleotide

• Length: 1356 bp

>NTDB_id=427335 G8C43_RS09290 WP_166005607.1 2166023..2167378(-) (radA) [Apibacter sp. B2966]
ATGGCTAAGGCTAAAACTACTTTTTTTTGTCAAAATTGCGGAACTCAATATTCTCAATGGCTGGGTCAATGCAAAGTATG
CGGAGAATGGAACACTATTGTAGAAGAAGTTATTGAAAAAAGTTCTGCAAATTCTATTTCTTCCCTTAGTTCCTCTTCTT
CTAAAAATAAAATATATAAGATTCATGAAATTGAAACTACGGATGAGTATCGTATTCTTTCTAATGACTCTGAACTGGAT
CATTTATTAGGTGGCGGTATTGTTCCCGGTAGTGTTATTTTGATTGGAGGCGAACCCGGCATTGGTAAATCTACTTTGTT
GTTGCAAATTTCTTTACAAATACCCAAAAAAGTATTATATGTTTCGGGGGAGGAAAGCAGTAATCAAATTAAAATGAGAT
CTGACCGTCTGGATATTTCTAATTCTGAATGCTATATTTTAACGGAAACTTCAACTCAAAAGATTTTAAAGAAAGCTCAT
GAGCTTCAACCGGAGTTGTTAGTGATTGATTCCATTCAAACTCTACATTCTTCTTATATAGAATCTTCTCCGGGAAGTAT
ATCTCAAATTAGAGAATGTGCTTCCGAATTAATTAAATATGCTAAGGAAACTTCTACTCCTGTATTTTTAATTGGACATA
TTACTAAGGAGGGTTCTATAGCCGGTCCTAAAATTTTAGAGCATATGGTAGATGTCGTTCTTCAGTTTGAAGGGGACAGA
AATTATGTTTACCGACTTTTACGTGCAAATAAAAATAGGTATGGTTCTACTTCTGAACTTGGAATTTATGAAATGTTCTC
TTCCGGATTGAAACAGGTAAAAAATCCGTCTGAAATTTTAGTATCTAAAAAAGATGAAAGTTTATCGGGAAATGCTATTG
CGGTTACTTTGGAAGGATTACGCCCTATGTTGGTTGAAATTCAAGCATTGGTATCAACGGCTGTTTATGGAACGCCTCAA
CGGGTGACAACGGGTTTTGACGTTAAACGATTAAATATGTTATTAGCTGTTTTGGAAAAGCGTGCGGGTTTTCATTTGGG
AACTAAGGATGTGTTTTTAAATGTTACCGGAGGTATTCGTGTTGATGATCCTGCTATTGACTTAGCTGTTATTTGTGCTA
TTTTGTCTTCTAATGAGGATATTTCTTTACCGGATAATTGTTTATTCGCCGGTGAAATTGGTTTAAGTGGTGAAATCAGA
CCTGTAAATCGTATTGAACAGCGAATCATTGAGGCTGAAAAATTGGGTTATGATGTCATTTTCATTTCTAAATATAATAA
AATAGATCGCAAGAAATATAATATTAGGGTTGAAATGGTTTCTAAGGTTGAGGATGTTTATAAGTTATTATTCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (65-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• Subunit ChlI of Mg-chelatase (ChlI) (340-426)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	48.684	100	0.492
radA	Streptococcus pneumoniae R6	48.684	100	0.492
radA	Streptococcus pneumoniae TIGR4	48.684	100	0.492
radA	Streptococcus mitis NCTC 12261	48.684	100	0.492
radA	Streptococcus pneumoniae D39	48.684	100	0.492
radA	Streptococcus mitis SK321	48.352	100	0.488
radA	Bacillus subtilis subsp. subtilis str. 168	50.812	95.565	0.486