Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DER53_RS16380 Genome accession   NZ_CP049703
Coordinates   3184817..3186538 (-) Length   573 a.a.
NCBI ID   WP_062752869.1    Uniprot ID   A0A6G9J5X9
Organism   Parageobacillus toebii NBRC 107807 strain DSM 14590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3179817..3191538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DER53_RS16355 (DER53_16350) - 3181002..3181250 (+) 249 WP_015864432.1 DUF2627 domain-containing protein -
  DER53_RS16360 (DER53_16355) - 3181264..3181998 (-) 735 WP_062678703.1 glycerophosphodiester phosphodiesterase -
  DER53_RS16365 (DER53_16360) - 3182108..3182254 (+) 147 WP_015864434.1 YycC family protein -
  DER53_RS16370 (DER53_16365) spo0A 3182306..3183085 (-) 780 WP_062752865.1 sporulation transcription factor Spo0A -
  DER53_RS16375 (DER53_16370) spoIVB 3183399..3184691 (-) 1293 WP_015864436.1 SpoIVB peptidase -
  DER53_RS16380 (DER53_16375) recN 3184817..3186538 (-) 1722 WP_062752869.1 DNA repair protein RecN Machinery gene
  DER53_RS16385 (DER53_16380) argR 3186558..3187007 (-) 450 WP_015864438.1 transcriptional regulator ArgR -
  DER53_RS16390 (DER53_16385) - 3187074..3187907 (-) 834 WP_062752871.1 TlyA family RNA methyltransferase -
  DER53_RS16395 (DER53_16390) dxs 3187911..3189803 (-) 1893 WP_062752872.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DER53_RS16400 (DER53_16395) - 3190020..3190913 (-) 894 WP_015864441.1 polyprenyl synthetase family protein -
  DER53_RS16405 (DER53_16400) - 3190916..3191149 (-) 234 WP_062752874.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64825.99 Da        Isoelectric Point: 4.8936

>NTDB_id=427326 DER53_RS16380 WP_062752869.1 3184817..3186538(-) (recN) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGEDKAEIEGLFLLDNENHPCYDK
CAEVGIDISEGMVVLRREIFATGKSVCRVNGKLVTTAILRDIGSTLVDIHGQHEHQELMNPSRHLPLLDEYGGAEIAEAL
EEYRAVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQPNEDEQLMEEKVKIMNFQKIYEALKHSYEALSG
EQRGLDWIGLAMSHLDDVASIDPALKEAYETIANSYYLLEDITYKLRDELEQLEYDPARLDFIESRLSEINQLKRKYGST
IEDILQYAEKITEEIDTIQHRETHIHELQKELKSVTEDLLIEAKNVTNVRKKYAKTLINHIHQELKELYMEKTQFDIVFT
KREGSLDAPLLDGVPVKFHEDGVDDVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRISIDSQVLCISHLPQVAAMADTHLFIAKETDGSRTRTSVKELSDEEKVKEIGRMISGVEITELTKKH
AKELLELATKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=427326 DER53_RS16380 WP_062752869.1 3184817..3186538(-) (recN) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
TTGCTAGCGGAATTATCCATAAAAAATTTTGCGATTATTGAATCATTGTCCATTTCGTTTGAAAAAGGACTGACGGTGTT
AACTGGGGAAACGGGAGCGGGAAAGTCGATTATTATTGATGCGATCCATCTGCTGATCGGAGGACGGGGTTCGGCAGAAT
TTGTCCGCTACGGAGAAGACAAGGCGGAAATAGAAGGACTTTTTTTACTAGATAATGAAAACCATCCATGTTATGACAAA
TGTGCCGAAGTCGGCATTGACATTAGCGAAGGCATGGTTGTTTTGCGCCGTGAAATTTTCGCAACTGGAAAAAGCGTATG
CCGCGTAAACGGAAAATTAGTGACGACGGCTATATTGCGCGATATCGGTTCTACGCTTGTCGATATTCATGGGCAACATG
AACATCAAGAATTAATGAATCCATCTCGGCATCTTCCGCTACTTGATGAATACGGCGGGGCGGAAATTGCGGAGGCTCTT
GAGGAATATCGCGCCGTTTATGAGAAGTATGAACAATTGCGGAAGAAACTAAAAAAGCTAAATGAAAATGAGCAGCAAAT
GGCGCATCGCCTTGATTTATTAACATTTCAGCTAGATGAAATTCAAAAAGCGAATTTACAGCCAAACGAAGATGAACAGT
TGATGGAAGAAAAAGTAAAAATTATGAACTTCCAAAAGATTTACGAAGCGCTTAAACATAGTTATGAGGCATTATCCGGC
GAGCAGCGCGGTCTTGACTGGATTGGTTTGGCAATGAGCCATTTAGATGATGTCGCTTCTATTGACCCGGCATTAAAAGA
AGCGTATGAAACGATTGCGAATAGTTATTATTTATTGGAGGATATTACGTATAAATTACGCGATGAACTCGAACAATTGG
AATATGATCCAGCCCGCCTTGATTTTATTGAAAGCCGCCTTAGTGAAATCAATCAATTAAAACGAAAATACGGATCGACC
ATCGAAGATATTTTGCAATATGCAGAAAAAATTACAGAAGAAATCGATACGATTCAACATCGCGAAACCCATATTCACGA
ACTGCAAAAAGAATTGAAATCGGTGACGGAAGATTTATTAATCGAAGCGAAAAATGTGACGAATGTTCGCAAAAAGTACG
CGAAAACATTAATTAACCATATTCATCAAGAATTAAAAGAGCTGTATATGGAAAAAACACAATTTGATATCGTATTTACG
AAACGAGAAGGATCGCTTGATGCACCGCTGCTTGATGGTGTACCAGTGAAATTTCATGAAGATGGTGTCGATGATGTGGA
ATTTTATATTTCCACAAACGTTGGCGAACCGTTAAAACCGTTAGCGAAAATTGCCTCTGGCGGGGAATTGTCGCGCATCA
TGCTTGCATTAAAAAGCATATTTTCCAAACATCAAGGAGTTACATCGATTATTTTTGATGAAGTCGATACGGGGGTTAGC
GGCCGGGTTGCACAGGCGATTGCCGAAAAAATTTACCGCATCTCCATCGATTCGCAAGTGCTTTGCATTTCCCACCTGCC
GCAAGTAGCGGCGATGGCTGATACGCATTTGTTTATTGCGAAAGAAACAGATGGAAGCCGCACAAGAACGTCAGTCAAAG
AATTATCGGACGAAGAAAAAGTAAAGGAAATCGGCCGGATGATTTCTGGTGTAGAAATTACAGAACTGACGAAAAAACAT
GCAAAAGAGTTGCTTGAGCTAGCAACAAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9J5X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.286

100

0.644