Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IF722_RS07940 Genome accession   NZ_CP062360
Coordinates   1646718..1647992 (+) Length   424 a.a.
NCBI ID   WP_240025121.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641718..1652992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF722_RS07910 (IF722_07865) mnmA 1641920..1643038 (-) 1119 WP_156982119.1 tRNA 2-thiouridine(34) synthase MnmA -
  IF722_RS07915 (IF722_07870) - 1643039..1644181 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  IF722_RS07920 (IF722_07875) - 1644493..1645506 (+) 1014 WP_072491718.1 LLM class flavin-dependent oxidoreductase -
  IF722_RS07925 (IF722_07880) - 1645743..1645889 (-) 147 WP_000009238.1 SAS049 family protein -
  IF722_RS07930 (IF722_07885) - 1645929..1646111 (-) 183 WP_000752909.1 CsbD family protein -
  IF722_RS07935 (IF722_07890) - 1646211..1646633 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  IF722_RS07940 (IF722_07895) rarA 1646718..1647992 (+) 1275 WP_240025121.1 replication-associated recombination protein A Machinery gene
  IF722_RS07945 (IF722_07900) - 1648153..1648926 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  IF722_RS07950 (IF722_07905) - 1648926..1649054 (-) 129 WP_014937034.1 hypothetical protein -
  IF722_RS07960 (IF722_07915) aspS 1649387..1651153 (-) 1767 WP_072491717.1 aspartate--tRNA ligase -
  IF722_RS07965 (IF722_07920) hisS 1651169..1652431 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47249.87 Da        Isoelectric Point: 8.3539

>NTDB_id=427326 IF722_RS07940 WP_240025121.1 1646718..1647992(+) (rarA) [Staphylococcus aureus strain NAS_AN_157]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPIIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=427326 IF722_RS07940 WP_240025121.1 1646718..1647992(+) (rarA) [Staphylococcus aureus strain NAS_AN_157]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGGGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTATAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGTCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684