Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IF722_RS06960 Genome accession   NZ_CP062360
Coordinates   1461313..1461939 (+) Length   208 a.a.
NCBI ID   WP_098817842.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_157     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1456313..1466939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF722_RS06925 (IF722_06885) - 1457297..1457629 (-) 333 WP_000516800.1 DUF4889 domain-containing protein -
  IF722_RS06930 (IF722_06890) - 1457713..1458858 (-) 1146 WP_098817840.1 class I SAM-dependent RNA methyltransferase -
  IF722_RS06940 (IF722_06900) gpsB 1459509..1459853 (-) 345 WP_001286320.1 cell division regulator GpsB -
  IF722_RS06945 (IF722_06905) - 1459867..1460430 (-) 564 WP_072491622.1 DUF1273 domain-containing protein -
  IF722_RS06950 (IF722_06910) - 1460423..1460773 (-) 351 WP_001000802.1 YppE family protein -
  IF722_RS06955 (IF722_06915) - 1460828..1461007 (-) 180 WP_098817841.1 hypothetical protein -
  IF722_RS06960 (IF722_06920) recU 1461313..1461939 (+) 627 WP_098817842.1 Holliday junction resolvase RecU Machinery gene
  IF722_RS06965 (IF722_06925) - 1461936..1464119 (+) 2184 WP_000138347.1 transglycosylase domain-containing protein -
  IF722_RS06970 (IF722_06930) - 1464637..1464978 (-) 342 WP_000182027.1 YpoC family protein -
  IF722_RS06975 (IF722_06935) nth 1464983..1465642 (-) 660 WP_000253765.1 endonuclease III -
  IF722_RS06980 (IF722_06940) - 1465632..1466318 (-) 687 WP_069993908.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24570.01 Da        Isoelectric Point: 9.7083

>NTDB_id=427312 IF722_RS06960 WP_098817842.1 1461313..1461939(+) (recU) [Staphylococcus aureus strain NAS_AN_157]
MNYPNGKPYRKNSAIDRVKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVEIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=427312 IF722_RS06960 WP_098817842.1 1461313..1461939(+) (recU) [Staphylococcus aureus strain NAS_AN_157]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACAGAGTGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTAGAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

52.657

99.519

0.524