Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IF722_RS03880 Genome accession   NZ_CP062360
Coordinates   797753..798835 (+) Length   360 a.a.
NCBI ID   WP_072491405.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_157     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 792753..803835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF722_RS03860 (IF722_03830) - 793123..794193 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  IF722_RS03865 (IF722_03835) - 794511..795566 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  IF722_RS03870 (IF722_03840) - 795738..796379 (-) 642 WP_000192947.1 YigZ family protein -
  IF722_RS03875 (IF722_03845) fakB1 796523..797389 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  IF722_RS03880 (IF722_03850) comFA 797753..798835 (+) 1083 WP_072491405.1 DEAD/DEAH box helicase Machinery gene
  IF722_RS03885 (IF722_03855) - 798828..799502 (+) 675 WP_098817735.1 ComF family protein -
  IF722_RS03890 (IF722_03860) raiA 799563..800135 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  IF722_RS03895 (IF722_03865) secA 800549..803080 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  IF722_RS03900 (IF722_03870) - 803122..803220 (+) 99 WP_001791369.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42010.47 Da        Isoelectric Point: 9.6802

>NTDB_id=427285 IF722_RS03880 WP_072491405.1 797753..798835(+) (comFA) [Staphylococcus aureus strain NAS_AN_157]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQETLIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=427285 IF722_RS03880 WP_072491405.1 797753..798835(+) (comFA) [Staphylococcus aureus strain NAS_AN_157]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAACATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGACTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367