Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   G8B35_RS08160 Genome accession   NZ_CP049697
Coordinates   1610952..1611503 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain ABC3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605952..1616503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8B35_RS08125 (G8B35_08175) rsfS 1606533..1606886 (-) 354 WP_003049699.1 ribosome silencing factor -
  G8B35_RS08130 (G8B35_08180) - 1606888..1607148 (-) 261 WP_011528257.1 isochorismatase family protein -
  G8B35_RS08135 (G8B35_08185) yqeK 1607124..1607717 (-) 594 WP_003055753.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  G8B35_RS08140 (G8B35_08190) - 1607714..1608346 (-) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  G8B35_RS08145 (G8B35_08195) yhbY 1608415..1608723 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  G8B35_RS08150 (G8B35_08200) yqeH 1608748..1609866 (-) 1119 WP_011528256.1 ribosome biogenesis GTPase YqeH -
  G8B35_RS08155 (G8B35_08205) - 1609866..1610393 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  G8B35_RS08160 (G8B35_08210) comX/sigX/comX2/sigX2 1610952..1611503 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=427276 G8B35_RS08160 WP_010921894.1 1610952..1611503(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain ABC3]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=427276 G8B35_RS08160 WP_010921894.1 1610952..1611503(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain ABC3]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.