Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   SMULJ23_RS05360 Genome accession   NC_017768
Coordinates   1094676..1095638 (-) Length   320 a.a.
NCBI ID   WP_002264289.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1089676..1100638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS05330 (SMULJ23_1030) dprA 1090479..1091321 (-) 843 WP_002262865.1 DNA-processing protein DprA Machinery gene
  SMULJ23_RS05340 (SMULJ23_1032) - 1091488..1091769 (-) 282 WP_014678017.1 hypothetical protein -
  SMULJ23_RS05345 (SMULJ23_1033) - 1091841..1092857 (-) 1017 WP_002264286.1 siderophore ABC transporter substrate-binding protein -
  SMULJ23_RS05350 (SMULJ23_1034) - 1092905..1093711 (-) 807 WP_002264287.1 ATP-binding cassette domain-containing protein -
  SMULJ23_RS05355 (SMULJ23_1035) - 1093708..1094679 (-) 972 WP_002264288.1 iron chelate uptake ABC transporter family permease subunit -
  SMULJ23_RS05360 (SMULJ23_1036) ceuB 1094676..1095638 (-) 963 WP_002264289.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  SMULJ23_RS05365 (SMULJ23_1037) - 1095812..1096594 (-) 783 WP_014678018.1 ribonuclease HII -
  SMULJ23_RS05370 (SMULJ23_1038) ylqF 1096581..1097432 (-) 852 WP_002278556.1 ribosome biogenesis GTPase YlqF -
  SMULJ23_RS05375 (SMULJ23_1039) - 1097629..1098594 (-) 966 WP_014678019.1 hypothetical protein -
  SMULJ23_RS05380 (SMULJ23_1040) - 1098885..1099223 (-) 339 WP_002262855.1 ATP cone domain-containing protein -
  SMULJ23_RS05385 (SMULJ23_1041) dapA 1099531..1100412 (-) 882 WP_002262854.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence


Protein


Download         Length: 320 a.a.        Molecular weight: 34979.24 Da        Isoelectric Point: 9.8764

>NTDB_id=42695 SMULJ23_RS05360 WP_002264289.1 1094676..1095638(-) (ceuB) [Streptococcus mutans LJ23]
MKKVLTVPVLGAAAVFLSLVSIFIGVKSLSLFELGSLDDSQLNILLSSRIPRTVSILIAGSSLAVCGLIMQQLTQNKFVS
PTTAGTMDWAKLGVVVTIILFSKSSLLLQLIISSVFVIFGSLFFIYLLKVIKFKDDVFIPLVGLMLGKVVSAISTFLGVQ
FQILQSVNSWLEGHFSIMTSHRYEILFLVLPCMVLIYLYAHQFTIAGLGEDFSKNLGLNYQFIINLGLVLVSVMTAIIVT
VVGSLPFLGLIVPNSISAIKGDNMKNNLILTSFLGAVIVLICDIFGRLVIFPYEVSIGLTMGIIGSIFFLYFLMKGRRRS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=42695 SMULJ23_RS05360 WP_002264289.1 1094676..1095638(-) (ceuB) [Streptococcus mutans LJ23]
ATGAAAAAAGTACTCACTGTTCCAGTGCTGGGTGCAGCTGCAGTCTTTCTTTCTCTCGTTTCAATATTTATCGGTGTTAA
GAGTCTATCGCTTTTTGAACTGGGCTCTTTAGACGATTCACAACTTAACATTTTATTATCTAGTCGCATTCCTAGAACGG
TTAGTATTTTAATTGCTGGCTCTAGTTTAGCCGTTTGTGGTTTAATTATGCAGCAATTAACGCAAAATAAATTTGTCTCA
CCGACAACGGCTGGGACAATGGATTGGGCAAAGCTAGGTGTTGTTGTCACTATTATCTTATTTAGTAAATCTTCTTTACT
ATTGCAGTTGATTATTTCATCGGTCTTTGTCATTTTTGGTTCTTTGTTTTTTATCTATCTTTTAAAGGTTATTAAATTTA
AGGATGATGTTTTCATTCCTCTAGTAGGTCTGATGTTGGGGAAAGTTGTATCTGCAATCAGTACTTTTTTAGGAGTACAG
TTTCAGATATTGCAGTCTGTCAACAGTTGGTTAGAAGGTCATTTTTCCATCATGACTTCTCATCGATATGAGATTTTATT
TTTGGTGCTGCCTTGCATGGTATTAATTTACCTTTATGCTCATCAGTTTACTATAGCTGGCTTGGGAGAAGATTTTTCTA
AAAATCTAGGTTTGAATTATCAATTTATTATTAATTTAGGCTTGGTTCTTGTTTCGGTTATGACAGCTATCATTGTAACA
GTTGTTGGCAGTCTTCCTTTTTTAGGTTTGATTGTTCCTAATTCGATTTCTGCTATCAAGGGCGATAATATGAAGAACAA
CTTAATATTAACCTCTTTTTTAGGTGCTGTTATTGTGCTTATTTGTGATATTTTTGGACGTCTTGTTATTTTTCCTTATG
AAGTTTCTATTGGATTGACTATGGGAATAATAGGAAGTATCTTTTTTCTTTATTTTTTGATGAAGGGAAGAAGGCGTTCA
TGA

Domains


Predicted by InterProScan.

(15-315)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

46.082

99.688

0.459


Multiple sequence alignment