Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KKY_RS07055 Genome accession   NC_016078
Coordinates   1441359..1441835 (-) Length   158 a.a.
NCBI ID   WP_014130627.1    Uniprot ID   G4R9S1
Organism   Pelagibacterium halotolerans B2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1436359..1446835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKY_RS07035 (KKY_1454) rocF 1436800..1437726 (-) 927 WP_014130623.1 arginase -
  KKY_RS07040 (KKY_1455) - 1437844..1438278 (+) 435 WP_014130624.1 Lrp/AsnC family transcriptional regulator -
  KKY_RS07045 (KKY_1456) - 1438373..1440631 (+) 2259 WP_014130625.1 efflux RND transporter permease subunit -
  KKY_RS07050 (KKY_1457) - 1440801..1441298 (+) 498 WP_014130626.1 hypothetical protein -
  KKY_RS07055 (KKY_1458) ssb 1441359..1441835 (-) 477 WP_014130627.1 single-stranded DNA-binding protein Machinery gene
  KKY_RS07060 (KKY_1459) uvrA 1442155..1445046 (+) 2892 WP_014130628.1 excinuclease ABC subunit UvrA -
  KKY_RS20475 - 1445170..1445331 (+) 162 WP_158308058.1 hypothetical protein -
  KKY_RS19950 (KKY_1460) - 1445602..1445751 (+) 150 WP_014130629.1 DUF1127 domain-containing protein -
  KKY_RS07065 (KKY_1461) - 1445817..1446467 (-) 651 WP_014130630.1 glutathione S-transferase family protein -
  KKY_RS19955 (KKY_1462) - 1446609..1446758 (+) 150 WP_014130631.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17094.94 Da        Isoelectric Point: 5.3193

>NTDB_id=42680 KKY_RS07055 WP_014130627.1 1441359..1441835(-) (ssb) [Pelagibacterium halotolerans B2]
MSGSVNKVILVGNLGADPEVRSLPNGNPVVNLRIATSERWRDGGGGEPREKTEWHRVVIFSEGLAKVAQNYLKKGAKVYI
EGQLQTRKWEKDGQDQYTTEIVLQGFNSTLTMLDGRGEGGGDRDSGGYGGGSRQVENRGRPSSAPAFEPGGMDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=42680 KKY_RS07055 WP_014130627.1 1441359..1441835(-) (ssb) [Pelagibacterium halotolerans B2]
ATGTCGGGAAGCGTGAACAAGGTTATTCTGGTTGGCAATCTGGGTGCCGACCCCGAAGTGCGGTCGCTGCCCAACGGCAA
TCCGGTGGTCAATCTGCGTATTGCGACGTCGGAGCGCTGGCGCGACGGAGGGGGGGGGGAGCCGCGCGAAAAGACTGAAT
GGCACCGGGTTGTGATTTTCAGCGAAGGGCTGGCCAAGGTGGCCCAGAACTATCTCAAAAAGGGCGCCAAGGTTTATATC
GAGGGCCAGCTCCAGACCCGGAAATGGGAGAAGGACGGGCAGGACCAGTACACGACCGAGATCGTGCTGCAGGGTTTCAA
TTCGACCCTGACCATGCTCGACGGGCGCGGTGAAGGCGGCGGTGACCGCGACAGCGGCGGATATGGTGGCGGCAGCCGGC
AGGTCGAAAACCGCGGGCGGCCGTCCAGCGCTCCGGCGTTCGAGCCGGGTGGCATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4R9S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

100

0.551
  ssb Glaesserella parasuis strain SC1401

47.253

100

0.544
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.475
  ssb Neisseria meningitidis MC58

40.782

100

0.462

Multiple sequence alignment