Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SMULJ23_RS03250 Genome accession   NC_017768
Coordinates   661294..664932 (+) Length   1212 a.a.
NCBI ID   WP_014677877.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 656294..669932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS03235 (SMULJ23_0615) - 656447..656773 (+) 327 WP_002266136.1 hypothetical protein -
  SMULJ23_RS03240 (SMULJ23_0616) - 656948..657193 (+) 246 WP_002262921.1 SemiSWEET family transporter -
  SMULJ23_RS03245 (SMULJ23_0617) rexB 658062..661304 (+) 3243 WP_014677876.1 ATP-dependent nuclease subunit B Machinery gene
  SMULJ23_RS03250 (SMULJ23_0618) rexA 661294..664932 (+) 3639 WP_014677877.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SMULJ23_RS03255 (SMULJ23_0619) lacR 665157..665912 (+) 756 WP_002265225.1 transcriptional regulator LacR -
  SMULJ23_RS03260 (SMULJ23_0620) lacA 666218..666646 (+) 429 WP_002262463.1 galactose-6-phosphate isomerase subunit LacA -
  SMULJ23_RS03265 (SMULJ23_0621) lacB 666672..667187 (+) 516 WP_044560404.1 galactose-6-phosphate isomerase subunit LacB -
  SMULJ23_RS03270 (SMULJ23_0622) lacC 667206..668138 (+) 933 WP_002262465.1 tagatose-6-phosphate kinase -
  SMULJ23_RS03275 (SMULJ23_0623) lacD 668143..669123 (+) 981 WP_014677879.1 tagatose-bisphosphate aldolase -
  SMULJ23_RS03280 (SMULJ23_0624) - 669140..669613 (+) 474 WP_002265223.1 PTS sugar transporter subunit IIA -
  SMULJ23_RS03285 (SMULJ23_0625) - 669628..669930 (+) 303 WP_002265222.1 PTS fructose transporter subunit IIB -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 139162.83 Da        Isoelectric Point: 4.8349

>NTDB_id=42678 SMULJ23_RS03250 WP_014677877.1 661294..664932(+) (rexA) [Streptococcus mutans LJ23]
MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFT
VKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLK
NDVFDDLFTDYRTGDQAELFTKLVRNFVGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV
KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVT
VAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIR
QLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR
SQSEVLDATNSVFTHLMDETVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLV
AKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL
RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITGALSAKLDAFFETFLSWREFSLLNSLYDLVWKI
YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKG
LEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL
YVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG
SLEAEQAYDADNLKDNRQSDDIARALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKF
ELPQFSKKAGQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKV
YREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI
LLGGEKLEVVEI

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=42678 SMULJ23_RS03250 WP_014677877.1 661294..664932(+) (rexA) [Streptococcus mutans LJ23]
ATGACCTTTAAACCATTTTTAACAGATCAAGAAATAGCTTCCTTACAAATTCAAGAAGCTCAGTCTGATAAGAAACAAAA
ACGAACGCCTGAGCAAATTGAGGCTATTTACACTTCAGGAACCAATATTTTGGTTTCTGCCTCTGCTGGTTCAGGAAAAA
CCTTTGTGATGATTGAGCGGATTATGGATAAAATTCTGCGTGGTGTAACGATTGATCAGCTTTTTATTTCCACCTTTACC
GTTAAGGCTGCTGGTGAGCTTAAGGAGCGTTTAGAAAAGAAAATCACCGAGCAATTGCGTTTGACAAATGACACTGCCCT
CAAACAATTTCTCAGCGAACAACTCTTGGGATTGCAGACTGCGGATATTGGAACCATGGATGCCTTTACCCAAAAATTAG
TGACACAGTACGGCTATACCTTGGGAATTTCACCGAATTTTCGAATTTTACAAGATAAAAGCGAGCAGGATCTTCTTAAA
AATGATGTCTTTGACGACCTTTTTACTGATTACAGAACTGGCGATCAAGCAGAGCTTTTCACTAAGCTTGTTAGGAATTT
TGTTGGAAATCGAAAAGATTCGAGCAATTTTAGACAAATCATTTACAAAATTTATGATTTCAGTCAGGCAACCGATAATC
CCCAAAGATGGCTTTTGGAGAATTTCTTAAAAGGAGCCAATACCTATAAGGATTTTTCAGCTATTCCTGAACAAGAAGTG
AAAGACTTTTTGAATACTTTGCAGGAAACTGCTCTCGCTCTTCGTGATGTGACGGATTTAGAAGATTACAAGCAAGTAAC
GGCTAAAGGAACTCCAACAGCAGCTTATCAAAGGCACCTTAAAATGATTGAGCAGCTGCAGGATTGGGTCTTGCATTTTG
ACAGTCTATATGGGCGAGATGGTCTGGGGAAATTAGCAAATGACATTGCAACACTCATTCCATCTGGTAACGATGTGACA
GTAGCAGGAGTTAAATATCCTGTCTTTCGCAGTTTACACAGTCGCTTAAGAGGACTAAAACACTTGGAAACAATTTTCAA
GTATCAGGATCAAAGTCTGCCTTTGTTGCAAGTACTGCAATCTTTTACCCTTGATTTTTCAAAACAATACCTGCAAGCAA
AGATGCAGGAAAATGCCTTTGAGTTTTCAGACATTGCACATTTTGCTATCCAGATTTTAGAAGAAAATGATGCTATTCGT
CAGCTTTATATAGATAAGTATCACGAAGTCATGGTGGATGAATATCAGGATAATAATCACACCCAAGAGCGCATGTTGGA
ACTTTTATCTAATGGGCGCAATCGCTTCATGGTAGGAGATATTAAGCAGTCTATCTATCGGTTTCGTCAGGCAGATCCAC
AGATTTTTAATCAAAAATTTAAGGATTTTCAAGAGCATCCAGAGCATGGAAAACTCATTCTCTTAAAAGAAAACTTTCGG
AGTCAGTCAGAAGTCTTAGATGCTACCAATAGTGTTTTTACGCACCTTATGGACGAAACGGTTGGAGAAATTCTCTACGA
TGATACCCATCAGCTTGTGGCTGGCAGTTCAGCTCAGAAAATTCCTTATCCGCAAAATGAAACACAAGTCCTCATCTATG
ATACAAAAGATCAACAAAATCAAGATCTTGCTGTAGAAGATGATAGTAATCAAATCAGTCTAGGTGAGGTCAAATTGGTT
GCTAAGGAGATTATTCGCCTTCATAATGAAGAAAAGGTTCAGTTTGAAGATATTACCTTGCTTGTCTCATCGCGGACACG
CAATGATGGTATCTTGCAAACCTTTGATGATTATGGCATTCCTTTGGTGACTGATGGTGGTGAACAAAACTATCTGAAAT
CAGTGGAAGTTATGGTCATGTTGGATACTCTGCGTTCTATTGATAATCCTCTCAATGATTATGCTCTAGTAGCTCTTTTG
CGTTCACCTATGTTTGCTTTTGATGAGGATGACTTGGCTCGTCTAGCTCTGCAAAATCTACCAGATCAACACAAACAAAA
TCTTTATGAAAAGATGGAGAATGCCAGAAATGGCCAAGGCCAGCAAGTTCAGTTGATCACAGGAGCATTGTCTGCCAAAT
TGGATGCTTTCTTTGAAACTTTCCTCAGTTGGCGTGAGTTTAGTCTCTTAAATTCGCTCTATGATTTGGTTTGGAAAATT
TATAATGATAAGTTTTACTATGATTATGTGGGAAGTTTACCAAAATCTGAACAGCGCCAAGCCAATCTTTATGCTCTAGC
CCTGCGTGCCGATAACTTTGAGAAAACAGGTTTTAAGGGGTTGTCGCGCTTCATTCGCATGATTGACAAAATTCTAGAAA
ATCAAAATGACTTGGCTGATGTTGAAGTCGCTTTACCTAAAAATGCAGTGACGCTGATGACGATTCATAAGAGTAAGGGA
TTGGAATTTAAATATGTCTTTATTCTTAATATTGATAAAAAATTTAGCATTCAAGATATGACATCACCCTTAATCTTATC
GCGGCAAAACGGTGTTGGTATCAAGTATATTGCTGATATGAAAGAAGAACTAGAGGAAAAATTATTGCCGACAGTTAAAG
TCAGCATGGATACTCTTCCTTATCAACTGAATAAGCGTGAGCTTCGCCTGGCAACCCTATCTGAACAAATGCGATTGCTT
TATGTTGCCATGACACGATCTGAAAAGAAACTTTACTTGGTCGGAAAAGGCAGTCAGGAAAAATTAGGGGATCAGTATGA
TGGCAAATCAGAAAACAATCATTTGCCAGTAGCTGATCGTGAACACTATTTGACTTTTCAGGATTGGCTTTTGGCGATTG
AAGCTGCTTATGCTGCCGATGAACTTCATTTTAAAACAAGTTTTATAACGGATGAAGACTTAACAGAAGATAAAATGGGA
AGTTTAGAAGCAGAGCAGGCTTATGATGCGGATAATCTTAAGGATAATCGGCAATCAGATGATATTGCGCGTGCTTTAGA
TATGTTAGAAGCAGTTGAAAAATTAAATCAGCACTATAAGGCTGCTATCCATTTACCAACTGTTCGTACGCCAAGTCAGA
TCAAAAAATTTTATGAGCCTGTTATGGAAACAGAAGGTGTAGAGGTGATGCAAACTTCCTATCAGACTAAACCAAAGTTT
GAGCTGCCTCAATTTTCAAAAAAGGCAGGACAAGATCCAACAGCTCTTGGTTCAAGTGTTCATGAACTTATGCAGCGGCT
TCATTTGAGTGAACAGGTTAGTCTTGAAGATATTTTAACTGCTCTGGCAGAACTATCTGTAGAAGAAAATGTTAAAAAAG
CTATTCAGGTTGATAAGATTTTGCATTTCTTCCAGACCAGCCAACTGGGGAAACTCATTCAAGCAAATGCTGACAAGGTC
TATCGTGAAGCACCCTTTGCTATGCTGCAAGCGGATCCTGCAAGCGGAGAAGACTATGTCGTGCGGGGGATTATTGACGG
TTACATTCTTTTTGATAATCGGATTGTCCTCTTTGATTATAAAACAGATAAATTCACTAATAGTCAAGCTATTAAAGAGC
GTTACCGAGGTCAGATGACACTTTATGCTCAAGCTTTGAGCCAATCCTATAATATCCAACAAGTAGACAGTTATTTAATT
CTATTAGGCGGTGAAAAATTAGAAGTTGTGGAAATTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1041-1191)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-893)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.606

100

0.533

Multiple sequence alignment