Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IF739_RS06275 Genome accession   NZ_CP062346
Coordinates   1265058..1266140 (-) Length   360 a.a.
NCBI ID   WP_014532585.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_261     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1260058..1271140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF739_RS06255 (IF739_06190) - 1260673..1260771 (-) 99 Protein_1205 hypothetical protein -
  IF739_RS06260 (IF739_06195) secA 1260813..1263344 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  IF739_RS06265 (IF739_06200) raiA 1263758..1264330 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  IF739_RS06270 (IF739_06205) - 1264391..1265065 (-) 675 WP_001057965.1 ComF family protein -
  IF739_RS06275 (IF739_06210) comFA 1265058..1266140 (-) 1083 WP_014532585.1 DEAD/DEAH box helicase Machinery gene
  IF739_RS06280 (IF739_06215) fakB1 1266504..1267370 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  IF739_RS06285 (IF739_06220) - 1267514..1268155 (+) 642 WP_000192947.1 YigZ family protein -
  IF739_RS06290 (IF739_06225) - 1268327..1269382 (-) 1056 WP_000258151.1 MraY family glycosyltransferase -
  IF739_RS06295 (IF739_06230) - 1269700..1270770 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41994.47 Da        Isoelectric Point: 9.6802

>NTDB_id=426705 IF739_RS06275 WP_014532585.1 1265058..1266140(-) (comFA) [Staphylococcus aureus strain NAS_AN_261]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYIHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=426705 IF739_RS06275 WP_014532585.1 1265058..1266140(-) (comFA) [Staphylococcus aureus strain NAS_AN_261]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGGCGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATATCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGTCGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367