Detailed information NTG0426556

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: C2742_RS07640
• Genome accession: NZ_CP049684
• Coordinates: 1519125..1520015 (+)
• Length: 296 a.a.
• NCBI ID: WP_215278773.1
• Uniprot ID: -
• Organism: Polynucleobacter paneuropaeus strain AP-Creno-5A-D2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1514125..1525015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2742_RS07610 (C2742_07615)	pth	1514356..1514946 (+)	591	WP_215278771.1	aminoacyl-tRNA hydrolase	-
C2742_RS07615 (C2742_07620)	-	1514943..1515206 (-)	264	WP_112205456.1	YfhL family 4Fe-4S dicluster ferredoxin	-
C2742_RS07620 (C2742_07625)	coaD	1515225..1515716 (-)	492	WP_112205458.1	pantetheine-phosphate adenylyltransferase	-
C2742_RS07625 (C2742_07630)	rsmD	1515752..1516357 (-)	606	WP_112205460.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
C2742_RS07630 (C2742_07635)	-	1516360..1517697 (-)	1338	WP_215278772.1	pitrilysin family protein	-
C2742_RS07635 (C2742_07640)	-	1517694..1519064 (-)	1371	WP_112208578.1	pitrilysin family protein	-
C2742_RS07640 (C2742_07645)	pilA	1519125..1520015 (+)	891	WP_215278773.1	signal recognition particle-docking protein FtsY	Machinery gene
C2742_RS07645 (C2742_07650)	rpoH	1520186..1521049 (+)	864	WP_251365275.1	RNA polymerase sigma factor RpoH	-
C2742_RS07650 (C2742_07655)	-	1521060..1521650 (-)	591	WP_112237267.1	SCO family protein	-
C2742_RS07655 (C2742_07660)	cyoE	1521652..1522545 (-)	894	WP_112208582.1	heme o synthase	-
C2742_RS07660 (C2742_07665)	-	1522542..1523672 (-)	1131	WP_215278775.1	COX15/CtaA family protein	-
C2742_RS07665 (C2742_07670)	-	1523672..1524328 (-)	657	WP_215278050.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31820.55 Da
• Isoelectric Point: 6.6564

>NTDB_id=426556 C2742_RS07640 WP_215278773.1 1519125..1520015(+) (pilA) [Polynucleobacter paneuropaeus strain AP-Creno-5A-D2]
MLGLRKTLGSLFKSSRIDEAWFDTLEDSLIQSDVGMPTCMQLMASLRQAAKSEKVQDSETLQALLIQELTRLLQALEAHP
NPIFEHQSSHHPEIWLIVGVNGAGKTTTIGKLCKQFQSQGKSILLAAGDTFRAAARNQLLEWGQRNEVDVIAQESGDAAA
VAHDAIHAAISRKTDILIIDTAGRLATQDHLMEELKKVKRVIAKVLPGAPHHTLLILDGNTGQNGLNQVKAFHEALGLTG
LIVTKLDGTAKGGVICALANTFQNGPKPAVLALGKGEGIGDLIPFNASEYCAELFN

Nucleotide

• Length: 891 bp

>NTDB_id=426556 C2742_RS07640 WP_215278773.1 1519125..1520015(+) (pilA) [Polynucleobacter paneuropaeus strain AP-Creno-5A-D2]
ATGCTTGGCCTACGTAAAACCCTCGGATCGCTTTTCAAATCAAGCCGGATTGATGAGGCCTGGTTTGATACTCTCGAAGA
CTCCCTGATTCAGAGTGATGTAGGTATGCCGACGTGCATGCAATTAATGGCCAGCTTACGTCAAGCTGCTAAATCAGAAA
AAGTACAAGACTCAGAAACCCTACAAGCATTATTGATTCAAGAACTCACAAGGCTATTACAAGCATTAGAGGCTCACCCA
AATCCCATCTTTGAACATCAAAGTAGTCATCATCCAGAAATCTGGCTCATTGTTGGTGTCAATGGCGCTGGCAAGACCAC
CACGATTGGTAAGCTCTGCAAACAATTCCAGTCACAAGGAAAGTCCATTCTTCTGGCTGCTGGAGACACTTTCCGTGCCG
CCGCACGCAATCAACTCTTAGAGTGGGGGCAACGCAATGAAGTCGATGTGATTGCCCAAGAAAGTGGCGATGCTGCAGCC
GTGGCACACGATGCTATTCATGCTGCGATTTCTCGTAAGACGGACATATTGATTATTGACACTGCAGGTAGGCTGGCCAC
ACAAGACCATTTGATGGAAGAACTGAAGAAGGTCAAACGCGTCATCGCCAAGGTCCTTCCAGGGGCGCCTCACCACACGC
TATTGATTTTGGATGGCAATACGGGCCAGAATGGTTTAAACCAAGTAAAGGCCTTCCACGAAGCGCTGGGACTCACTGGT
CTGATCGTTACCAAACTCGATGGGACTGCCAAAGGCGGGGTCATTTGCGCTCTTGCCAACACCTTTCAAAATGGCCCCAA
ACCTGCAGTTTTAGCGCTTGGCAAAGGCGAAGGAATCGGGGATCTAATCCCCTTCAATGCTTCTGAATATTGCGCCGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (93-295)

• SRP54-type protein, helical bundle domain (SRP54_N) (4-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.536	98.986	0.51