Detailed information NTG0426534

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: C2750_RS08075
• Genome accession: NZ_CP049682
• Coordinates: 1574513..1575403 (+)
• Length: 296 a.a.
• NCBI ID: WP_215279257.1
• Uniprot ID: -
• Organism: Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1569513..1580403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2750_RS08045 (C2750_08050)	pth	1569744..1570334 (+)	591	WP_112208576.1	aminoacyl-tRNA hydrolase	-
C2750_RS08050 (C2750_08055)	-	1570331..1570594 (-)	264	WP_112205456.1	YfhL family 4Fe-4S dicluster ferredoxin	-
C2750_RS08055 (C2750_08060)	coaD	1570613..1571104 (-)	492	WP_112205458.1	pantetheine-phosphate adenylyltransferase	-
C2750_RS08060 (C2750_08065)	rsmD	1571140..1571745 (-)	606	WP_112205460.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
C2750_RS08065 (C2750_08070)	-	1571748..1573085 (-)	1338	WP_215273556.1	pitrilysin family protein	-
C2750_RS08070 (C2750_08075)	-	1573082..1574452 (-)	1371	WP_112208578.1	pitrilysin family protein	-
C2750_RS08075 (C2750_08080)	pilA	1574513..1575403 (+)	891	WP_215279257.1	signal recognition particle-docking protein FtsY	Machinery gene
C2750_RS08080 (C2750_08085)	rpoH	1575574..1576437 (+)	864	WP_244973723.1	RNA polymerase sigma factor RpoH	-
C2750_RS08085 (C2750_08090)	-	1576448..1577038 (-)	591	WP_112237267.1	SCO family protein	-
C2750_RS08090 (C2750_08095)	cyoE	1577040..1577933 (-)	894	WP_112208582.1	heme o synthase	-
C2750_RS08095 (C2750_08100)	-	1577930..1579060 (-)	1131	WP_215286041.1	COX15/CtaA family protein	-
C2750_RS08100 (C2750_08105)	-	1579060..1579716 (-)	657	WP_215286042.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31876.61 Da
• Isoelectric Point: 6.4966

>NTDB_id=426534 C2750_RS08075 WP_215279257.1 1574513..1575403(+) (pilA) [Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2]
MLGLRKTLGSLFKSSRIDEAWFDTLEDSLIQSDVGMPTCMQLMASLRQAAKSEKVQDSETLQALLIQELTRLLQALEAHP
NPIFEHQSSHHPEIWLIVGVNGAGKTTTIGKLCKQFQSQGKSILLAAGDTFRAAARNQLLEWGQRNEVDVIAQESGDAAA
VAHDAIHAAISRKTDILIIDTAGRLATQDHLMEELKKVKRVIAKVLPGAPHHTLLILDGNTGQNGLNQVKAFHEALGLTG
LIVTKLDGTAKGGVICALANTFQNGPKPAVLALGKGEGIEDLIPFNAAEYCAELFN

Nucleotide

• Length: 891 bp

>NTDB_id=426534 C2750_RS08075 WP_215279257.1 1574513..1575403(+) (pilA) [Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2]
ATGCTTGGCCTACGTAAAACCCTCGGATCGCTTTTCAAATCAAGCCGGATTGATGAGGCCTGGTTTGATACTCTCGAAGA
CTCCCTGATTCAGAGTGATGTAGGTATGCCGACGTGCATGCAATTAATGGCCAGCTTACGTCAAGCTGCTAAATCAGAAA
AAGTACAAGACTCAGAAACCCTACAAGCATTATTGATTCAAGAACTCACAAGGCTATTACAAGCATTAGAGGCTCACCCA
AATCCCATCTTTGAACATCAAAGTAGTCATCATCCAGAAATCTGGCTCATTGTTGGTGTCAATGGCGCTGGCAAGACCAC
CACGATTGGTAAGCTCTGCAAACAATTCCAGTCACAAGGAAAGTCCATTCTTCTGGCTGCTGGAGACACTTTCCGTGCCG
CCGCACGTAATCAACTCTTAGAGTGGGGGCAACGCAATGAAGTCGATGTGATTGCCCAAGAAAGTGGCGATGCTGCAGCC
GTGGCACACGATGCTATTCATGCTGCGATTTCTCGTAAGACGGACATATTGATTATTGACACTGCAGGTAGGCTGGCCAC
ACAAGACCATTTGATGGAAGAACTGAAGAAGGTCAAACGCGTCATCGCCAAGGTCCTTCCAGGGGCGCCTCACCACACGC
TATTGATTTTGGATGGCAATACGGGCCAGAATGGTTTAAACCAAGTAAAGGCCTTCCACGAAGCGCTGGGACTCACTGGT
CTGATCGTTACCAAACTCGATGGGACTGCCAAAGGCGGGGTCATTTGCGCTCTTGCCAACACCTTTCAAAATGGCCCCAA
ACCTGCAGTTTTAGCGCTTGGCAAAGGCGAAGGAATCGAGGATCTAATCCCCTTCAATGCTGCAGAATATTGCGCTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (93-295)

• SRP54-type protein, helical bundle domain (SRP54_N) (4-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.536	98.986	0.51