Detailed information NTG0426522

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: C2752_RS07600
• Genome accession: NZ_CP049681
• Coordinates: 1510250..1511140 (+)
• Length: 296 a.a.
• NCBI ID: WP_215278773.1
• Uniprot ID: -
• Organism: Polynucleobacter paneuropaeus strain AP-RePozz9-5-D10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1505250..1516140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2752_RS07570 (C2752_07565)	pth	1505481..1506071 (+)	591	WP_215278771.1	aminoacyl-tRNA hydrolase	-
C2752_RS07575 (C2752_07570)	-	1506068..1506331 (-)	264	WP_112205456.1	YfhL family 4Fe-4S dicluster ferredoxin	-
C2752_RS07580 (C2752_07575)	coaD	1506350..1506841 (-)	492	WP_112205458.1	pantetheine-phosphate adenylyltransferase	-
C2752_RS07585 (C2752_07580)	rsmD	1506877..1507482 (-)	606	WP_112205460.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
C2752_RS07590 (C2752_07585)	-	1507485..1508822 (-)	1338	WP_215278772.1	pitrilysin family protein	-
C2752_RS07595 (C2752_07590)	-	1508819..1510189 (-)	1371	WP_112208578.1	pitrilysin family protein	-
C2752_RS07600 (C2752_07595)	pilA	1510250..1511140 (+)	891	WP_215278773.1	signal recognition particle-docking protein FtsY	Machinery gene
C2752_RS07605 (C2752_07600)	rpoH	1511311..1512174 (+)	864	WP_251365275.1	RNA polymerase sigma factor RpoH	-
C2752_RS07610 (C2752_07605)	-	1512185..1512775 (-)	591	WP_112237267.1	SCO family protein	-
C2752_RS07615 (C2752_07610)	cyoE	1512777..1513670 (-)	894	WP_112208582.1	heme o synthase	-
C2752_RS07620 (C2752_07615)	-	1513667..1514797 (-)	1131	WP_215278775.1	COX15/CtaA family protein	-
C2752_RS07625 (C2752_07620)	-	1514797..1515453 (-)	657	WP_215278050.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31820.55 Da
• Isoelectric Point: 6.6564

>NTDB_id=426522 C2752_RS07600 WP_215278773.1 1510250..1511140(+) (pilA) [Polynucleobacter paneuropaeus strain AP-RePozz9-5-D10]
MLGLRKTLGSLFKSSRIDEAWFDTLEDSLIQSDVGMPTCMQLMASLRQAAKSEKVQDSETLQALLIQELTRLLQALEAHP
NPIFEHQSSHHPEIWLIVGVNGAGKTTTIGKLCKQFQSQGKSILLAAGDTFRAAARNQLLEWGQRNEVDVIAQESGDAAA
VAHDAIHAAISRKTDILIIDTAGRLATQDHLMEELKKVKRVIAKVLPGAPHHTLLILDGNTGQNGLNQVKAFHEALGLTG
LIVTKLDGTAKGGVICALANTFQNGPKPAVLALGKGEGIGDLIPFNASEYCAELFN

Nucleotide

• Length: 891 bp

>NTDB_id=426522 C2752_RS07600 WP_215278773.1 1510250..1511140(+) (pilA) [Polynucleobacter paneuropaeus strain AP-RePozz9-5-D10]
ATGCTTGGCCTACGTAAAACCCTCGGATCGCTTTTCAAATCAAGCCGGATTGATGAGGCCTGGTTTGATACTCTCGAAGA
CTCCCTGATTCAGAGTGATGTAGGTATGCCGACGTGCATGCAATTAATGGCCAGCTTACGTCAAGCTGCTAAATCAGAAA
AAGTACAAGACTCAGAAACCCTACAAGCATTATTGATTCAAGAACTCACAAGGCTATTACAAGCATTAGAGGCTCACCCA
AATCCCATCTTTGAACATCAAAGTAGTCATCATCCAGAAATCTGGCTCATTGTTGGTGTCAATGGCGCTGGCAAGACCAC
CACGATTGGTAAGCTCTGCAAACAATTCCAGTCACAAGGAAAGTCCATTCTTCTGGCTGCTGGAGACACTTTCCGTGCCG
CCGCACGCAATCAACTCTTAGAGTGGGGGCAACGCAATGAAGTCGATGTGATTGCCCAAGAAAGTGGCGATGCTGCAGCC
GTGGCACACGATGCTATTCATGCTGCGATTTCTCGTAAGACGGACATATTGATTATTGACACTGCAGGTAGGCTGGCCAC
ACAAGACCATTTGATGGAAGAACTGAAGAAGGTCAAACGCGTCATCGCCAAGGTCCTTCCAGGGGCGCCTCACCACACGC
TATTGATTTTGGATGGCAATACGGGCCAGAATGGTTTAAACCAAGTAAAGGCCTTCCACGAAGCGCTGGGACTCACTGGT
CTGATCGTTACCAAACTCGATGGGACTGCCAAAGGCGGGGTCATTTGCGCTCTTGCCAACACCTTTCAAAATGGCCCCAA
ACCTGCAGTTTTAGCGCTTGGCAAAGGCGAAGGAATCGGGGATCTAATCCCCTTCAATGCTTCTGAATATTGCGCCGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (93-295)

• SRP54-type protein, helical bundle domain (SRP54_N) (4-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.536	98.986	0.51