Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G7Z35_RS02835 Genome accession   NZ_CP049679
Coordinates   538730..540094 (+) Length   454 a.a.
NCBI ID   WP_112313838.1    Uniprot ID   -
Organism   Polynucleobacter paneuropaeus strain AP-Creno-20-G10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 533730..545094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7Z35_RS02815 (G7Z35_02830) - 535444..535683 (-) 240 WP_133256482.1 hypothetical protein -
  G7Z35_RS02825 (G7Z35_02840) - 536251..538191 (+) 1941 WP_215278384.1 potassium transporter Kup -
  G7Z35_RS02830 (G7Z35_02845) - 538188..538691 (+) 504 WP_215279437.1 hypothetical protein -
  G7Z35_RS02835 (G7Z35_02850) radA 538730..540094 (+) 1365 WP_112313838.1 DNA repair protein RadA Machinery gene
  G7Z35_RS02840 (G7Z35_02855) prmB 540091..540987 (-) 897 WP_215279438.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  G7Z35_RS02845 (G7Z35_02860) dapE 541017..542168 (-) 1152 WP_215278979.1 succinyl-diaminopimelate desuccinylase -
  G7Z35_RS02850 (G7Z35_02865) dapD 542175..543002 (-) 828 WP_112237815.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48356.20 Da        Isoelectric Point: 7.6369

>NTDB_id=426492 G7Z35_RS02835 WP_112313838.1 538730..540094(+) (radA) [Polynucleobacter paneuropaeus strain AP-Creno-20-G10]
MAKAKTIYVCQSCGGTSAKWQGQCPSCQAWNTMEEGLPESSTPSRFQGLAQSLPRQKLAAITAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSSAGMHVLYSSGEESAAQIALRAKRIALEAPALEVLAEIQLEKLLSIME
TVKPQVLVVDSIQTLYSEAFSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVSNPSAIFLSQHEQMVPGACVLVTQEGTRPLLVEIQALVDTAHIPNPR
RLAVGLEQHRLAMLLAVLHRHAGVACFDQDVFLNAVGGVKITEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFKLAIIPKANMPKNKIPGLKVIPVERIDQAIAAANELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=426492 G7Z35_RS02835 WP_112313838.1 538730..540094(+) (radA) [Polynucleobacter paneuropaeus strain AP-Creno-20-G10]
TTGGCTAAAGCTAAAACGATTTATGTCTGTCAATCATGTGGCGGAACCTCTGCTAAATGGCAAGGGCAGTGTCCTTCCTG
TCAGGCTTGGAACACAATGGAGGAAGGACTTCCTGAGTCGAGTACACCATCCCGCTTTCAGGGTTTGGCTCAATCTTTGC
CAAGACAAAAACTTGCAGCAATTACTGCGGAAGATTTACCTCGTTTTAGTACTGGGGTAGAAGAGTTCGATCGCGTTTTA
GGTGGTGGCTTAGTTCCGGGTGGTGTTGTACTTTTGGGTGGTGATCCCGGCATTGGTAAATCCACCTTGTTACTTCAGGC
TTTGGCTGAGATGAGTTCAGCTGGTATGCATGTTCTCTACAGTAGTGGCGAAGAGTCAGCTGCGCAAATTGCATTGCGGG
CTAAACGGATTGCTTTAGAAGCCCCTGCGCTTGAAGTATTGGCTGAGATTCAGCTAGAGAAGCTGTTGTCCATCATGGAA
ACTGTGAAGCCTCAAGTGCTCGTGGTGGACTCTATTCAAACTTTGTATTCAGAAGCCTTCAGTTCTGCGCCAGGCTCAGT
AGCCCAGGTGCGTGAATGTGCCGCACAACTCACGAGGGCCGCCAAGTCCAGTGGTATCTGTGTATTGATGGTTGGGCATG
TCACCAAAGACGGTCATCTTGCTGGTCCTCGTGTCTTAGAACATATTGTGGATACGGTTTTGTATTTTGAGGGCGATACG
CATTCTTCATTTAGATTGGTGCGTTCGATTAAAAACCGCTTTGGCGCTGTCAATGAGCTCGGTGTTTTTGCGATGACTGA
AAAAGGTCTGCGTGGTGTATCGAATCCATCAGCGATTTTCTTATCGCAGCACGAACAGATGGTGCCAGGAGCTTGTGTTC
TGGTAACGCAAGAAGGTACCAGACCACTCTTAGTGGAGATCCAGGCTTTGGTTGATACCGCCCATATCCCCAACCCAAGA
AGATTGGCGGTAGGGTTGGAGCAGCATCGCTTGGCAATGCTGCTGGCGGTCTTACATCGTCATGCTGGGGTCGCTTGCTT
TGATCAAGACGTATTCTTAAACGCAGTAGGCGGCGTCAAAATCACTGAGCCTGCTGCTGACTTAGCTGTTCTACTCGCTA
TTCAATCCTCGATTCGAAATCGTGCACTACCCAAAGAATTGATCGTCTTCGGTGAAGTCGGTTTAGCTGGGGAGATTCGC
CCATGCCCGAGAGGTCAGGAACGATTGAAGGAAGCTGCCAAATTGGGCTTTAAGCTTGCAATCATTCCGAAGGCCAATAT
GCCAAAGAATAAAATTCCGGGACTTAAAGTAATCCCTGTTGAAAGAATTGACCAGGCGATTGCTGCAGCGAATGAGCTGA
GCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-218)

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

99.559

0.493
  radA Streptococcus pneumoniae Rx1

46.222

99.119

0.458
  radA Streptococcus pneumoniae D39

46.222

99.119

0.458
  radA Streptococcus pneumoniae R6

46.222

99.119

0.458
  radA Streptococcus pneumoniae TIGR4

46.222

99.119

0.458
  radA Streptococcus mitis NCTC 12261

47.14

96.256

0.454
  radA Streptococcus mitis SK321

47.14

96.256

0.454