Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   TEH_RS03270 Genome accession   NC_016052
Coordinates   702988..704805 (+) Length   605 a.a.
NCBI ID   WP_014124072.1    Uniprot ID   A0AAN1VR64
Organism   Tetragenococcus halophilus NBRC 12172     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 697988..709805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEH_RS03250 (TEH_06750) - 698682..700397 (+) 1716 WP_014124068.1 ABC transporter ATP-binding protein -
  TEH_RS03255 (TEH_06760) spxA 700557..700955 (+) 399 WP_014124069.1 transcriptional regulator SpxA -
  TEH_RS03260 (TEH_06770) - 701104..701820 (+) 717 WP_014124070.1 adaptor protein MecA -
  TEH_RS03265 (TEH_06780) - 701931..702899 (+) 969 WP_014124071.1 competence protein CoiA -
  TEH_RS03270 (TEH_06790) pepF 702988..704805 (+) 1818 WP_014124072.1 oligoendopeptidase F Regulator
  TEH_RS03275 (TEH_06800) - 704879..705454 (-) 576 WP_014124073.1 CYTH domain-containing protein -
  TEH_RS03280 (TEH_06810) - 705610..706284 (+) 675 WP_014124074.1 GTP pyrophosphokinase family protein -
  TEH_RS03285 (TEH_06820) - 706277..707083 (+) 807 WP_041591767.1 NAD kinase -
  TEH_RS03290 (TEH_06830) - 707218..708120 (+) 903 WP_014124076.1 RluA family pseudouridine synthase -
  TEH_RS03295 (TEH_06840) mgtE 708126..709490 (+) 1365 WP_041591768.1 magnesium transporter -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69922.90 Da        Isoelectric Point: 4.7122

>NTDB_id=42649 TEH_RS03270 WP_014124072.1 702988..704805(+) (pepF) [Tetragenococcus halophilus NBRC 12172]
MSEAKKLPKRDEVAENLTWDLTKIFKDDQAFEKAFSALQEKLQYADSYRGTLGDGPQAFLAAFEYLLDVSRQLETVYVYS
HLKNDQDTSNTTYQALNSRAESLVTQADEKLSFFEPELLSLSDEKIWQYFKDEPKLEIYRHFVDQIVANRAHVLPKEQEA
LLAGAGEIFGASSNTFSIMNNADFVFPVIEDENGEKVQLSHGVYGQLMESTDRLVRENAFKGLYSVYKQFANTLASTLNS
HIKTHNYQAKVRHYHSAREAALSSNHIPETVYDHLVDVVNKNLNLLHRYMGLRKRLLQVENLHMYDVYTPLLGEAPISFT
YDQAVEKAFEALAPMGEEYLSVVKKAFDERWIDVVENQGKRSGAYSSGTYDTNPYILLNWHDTLDHLFTLVHEMGHSVHS
YFTQNNQPYVYGDYSIFLAEIASTTNENILTEHLLQTENDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDAKGT
PLTSEFLNEHYGELNRRYYGDEMEDDPEIHLEWSRIPHFYYNYYVFQYATGFSAASALSQKILSEDSSALDRYLTYLKSG
DSDYPIEVMKKAGVDMTKSDYLEDAMHVFEERLNELELLVDELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=42649 TEH_RS03270 WP_014124072.1 702988..704805(+) (pepF) [Tetragenococcus halophilus NBRC 12172]
ATGTCAGAAGCTAAAAAATTACCTAAACGAGACGAAGTGGCAGAAAATTTGACTTGGGATTTAACAAAAATCTTTAAAGA
TGACCAAGCATTTGAAAAAGCTTTTAGCGCGCTACAAGAAAAACTGCAATATGCCGATTCCTATAGAGGAACCCTAGGGG
ACGGGCCACAAGCATTTTTAGCTGCATTTGAATATTTATTAGATGTTTCTCGTCAATTAGAGACTGTCTATGTTTATAGC
CATTTAAAAAATGACCAGGATACTTCAAATACAACTTACCAAGCGCTTAATTCTAGAGCAGAATCTTTGGTAACACAAGC
AGATGAAAAATTATCTTTTTTTGAACCCGAATTATTATCGTTAAGTGATGAAAAGATTTGGCAATATTTTAAAGACGAAC
CAAAACTTGAAATTTATCGGCATTTTGTCGATCAAATCGTAGCAAATCGTGCCCACGTTTTGCCAAAAGAACAAGAAGCT
TTATTAGCAGGCGCTGGAGAGATCTTTGGTGCTTCTAGCAACACTTTTTCTATTATGAACAATGCTGATTTTGTTTTTCC
TGTCATTGAAGATGAAAATGGAGAAAAAGTACAGCTCTCTCATGGTGTTTATGGACAATTAATGGAAAGCACTGACCGTT
TAGTGCGTGAGAATGCTTTTAAAGGTCTATATAGTGTATACAAGCAGTTTGCCAACACCCTTGCCTCTACACTGAATTCA
CATATTAAAACACATAATTATCAAGCAAAAGTGCGCCATTACCATTCAGCTAGAGAAGCTGCCTTATCAAGCAACCATAT
TCCAGAAACAGTTTATGATCATTTAGTAGATGTGGTCAATAAAAACTTAAACCTTCTTCATCGTTATATGGGACTTAGGA
AGCGTTTATTACAAGTGGAAAATTTGCATATGTATGATGTTTACACGCCACTTTTAGGTGAAGCGCCTATTAGTTTTACT
TATGACCAGGCGGTAGAAAAAGCGTTTGAAGCACTAGCTCCTATGGGAGAAGAGTATTTAAGTGTCGTGAAAAAGGCCTT
TGATGAACGTTGGATCGATGTTGTAGAAAACCAAGGAAAACGTAGTGGCGCTTATTCTTCAGGTACTTATGATACCAATC
CTTATATTTTATTAAATTGGCATGATACACTGGACCATTTATTTACCTTGGTACATGAAATGGGGCACAGTGTTCATAGC
TACTTTACCCAAAATAATCAACCTTATGTATATGGTGATTATTCAATTTTCTTAGCAGAGATTGCTTCAACTACCAATGA
AAATATCTTGACTGAACATCTTTTACAAACAGAAAATGACCCACGTGTTCGGGCATATGTATTAAATCACTATTTAGACG
GGTTTAAAGGTACAGTCTTTCGTCAAACACAATTTGCGGAGTTTGAGCATTTTATGCACACTGAAGACGCTAAAGGTACA
CCATTAACAAGTGAGTTTTTAAATGAGCATTATGGAGAGTTGAATAGACGATATTACGGTGATGAAATGGAAGATGACCC
AGAAATACATCTTGAATGGTCGCGCATTCCTCATTTTTATTATAATTACTATGTGTTCCAATATGCGACAGGTTTTTCTG
CTGCTTCTGCTTTGTCTCAAAAAATCTTATCCGAAGACTCGAGTGCTTTGGATCGTTATTTGACCTATCTAAAATCTGGA
GATAGTGATTATCCTATTGAAGTGATGAAAAAAGCTGGAGTGGATATGACAAAATCGGATTATTTAGAAGATGCGATGCA
TGTTTTTGAAGAACGGTTAAATGAGTTAGAACTACTCGTTGATGAATTAGAAAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.806

98.017

0.537

Multiple sequence alignment