Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FV156_RS09020 Genome accession   NZ_CP049608
Coordinates   1887977..1888516 (-) Length   179 a.a.
NCBI ID   WP_002438358.1    Uniprot ID   H5V742
Organism   Atlantibacter hermannii strain 78-1320     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1882977..1893516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FV156_RS09000 - 1883150..1884754 (-) 1605 WP_043866090.1 EAL domain-containing protein -
  FV156_RS09005 - 1885042..1886439 (-) 1398 WP_002433957.1 sensor domain-containing diguanylate cyclase -
  FV156_RS09010 - 1887013..1887291 (+) 279 WP_165431427.1 YjcB family protein -
  FV156_RS09015 - 1887326..1887670 (-) 345 WP_002433952.1 hypothetical protein -
  FV156_RS09020 ssb 1887977..1888516 (-) 540 WP_002438358.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FV156_RS09025 uvrA 1888777..1891614 (+) 2838 WP_002438359.1 excinuclease ABC subunit UvrA -
  FV156_RS09030 - 1891616..1891969 (-) 354 WP_002438361.1 MmcQ/YjbR family DNA-binding protein -
  FV156_RS09035 - 1891966..1892388 (-) 423 WP_148051959.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19380.37 Da        Isoelectric Point: 5.2358

>NTDB_id=426470 FV156_RS09020 WP_002438358.1 1887977..1888516(-) (ssb) [Atlantibacter hermannii strain 78-1320]
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQQAQGGNQFSGGAQSRPQQQQ
APASSNNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=426470 FV156_RS09020 WP_002438358.1 1887977..1888516(-) (ssb) [Atlantibacter hermannii strain 78-1320]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTATTTGCCAAGTGG
CGGCGCAGTCGCTAACTTCACGCTGGCTACTTCTGACTCCTGGCGCGATAAGCAAACCGGCGAAATGAAGGAACAGACTG
AGTGGCACCGCGTTGTGATGTTCGGCAAACTGGCTGAAGTGGCAGGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCTGGTCAGGAACGCTATACCACCGAGATTAACGTTCCACAAAT
CGGCGGCGTAATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCGCCGGCTGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAACAGCCGCAGCAAGCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCACGTCCGCAGCAGCAACAG
GCGCCAGCCTCATCTAACAATGAGCCGCCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H5V742

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.196

100

0.732
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.603
  ssb Neisseria meningitidis MC58

46.154

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.464
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.464

100

0.369