Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IF742_RS06340 Genome accession   NZ_CP062340
Coordinates   1254063..1255145 (-) Length   360 a.a.
NCBI ID   WP_001566548.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_275     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249063..1260145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF742_RS06320 (IF742_06325) - 1249672..1249776 (-) 105 WP_001790092.1 hypothetical protein -
  IF742_RS06325 (IF742_06330) secA 1249818..1252349 (-) 2532 WP_000506408.1 preprotein translocase subunit SecA -
  IF742_RS06330 (IF742_06335) raiA 1252763..1253335 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  IF742_RS06335 (IF742_06340) - 1253396..1254070 (-) 675 WP_001057965.1 ComF family protein -
  IF742_RS06340 (IF742_06345) comFA 1254063..1255145 (-) 1083 WP_001566548.1 DEAD/DEAH box helicase Machinery gene
  IF742_RS06345 (IF742_06350) fakB1 1255509..1256375 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  IF742_RS06350 (IF742_06355) - 1256519..1257160 (+) 642 WP_000192947.1 YigZ family protein -
  IF742_RS06355 (IF742_06360) - 1257331..1258386 (-) 1056 WP_000258151.1 MraY family glycosyltransferase -
  IF742_RS06360 (IF742_06365) - 1258704..1259774 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42037.51 Da        Isoelectric Point: 9.6803

>NTDB_id=426440 IF742_RS06340 WP_001566548.1 1254063..1255145(-) (comFA) [Staphylococcus aureus strain NAS_AN_275]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=426440 IF742_RS06340 WP_001566548.1 1254063..1255145(-) (comFA) [Staphylococcus aureus strain NAS_AN_275]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364