Detailed information NTG0042640

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SMULJ23_RS00365
• Genome accession: NC_017768
• Coordinates: 61811..62806 (+)
• Length: 331 a.a.
• NCBI ID: WP_002263402.1
• Uniprot ID: -
• Organism: Streptococcus mutans LJ23
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 56811..67806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMULJ23_RS00350 (SMULJ23_0048)	-	57118..57807 (+)	690	WP_014677674.1	DNA alkylation repair protein	-
SMULJ23_RS00355 (SMULJ23_0049)	comR	58189..59103 (+)	915	WP_002300254.1	helix-turn-helix domain-containing protein	Regulator
SMULJ23_RS00360 (SMULJ23_0050)	-	59635..61476 (-)	1842	WP_002266377.1	carbohydrate-binding domain-containing protein	-
SMULJ23_RS00365 (SMULJ23_0051)	ruvB	61811..62806 (+)	996	WP_002263402.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SMULJ23_RS00370 (SMULJ23_0052)	-	62844..63269 (+)	426	WP_002264681.1	low molecular weight protein-tyrosine-phosphatase	-
SMULJ23_RS00375 (SMULJ23_0053)	-	63334..63717 (+)	384	WP_011074470.1	membrane protein	-
SMULJ23_RS00380 (SMULJ23_0054)	-	63714..65504 (+)	1791	WP_014677675.1	acyltransferase family protein	-
SMULJ23_RS00385 (SMULJ23_0056)	thrC	66186..67670 (+)	1485	WP_002285735.1	threonine synthase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37287.75 Da
• Isoelectric Point: 4.7070

>NTDB_id=42640 SMULJ23_RS00365 WP_002263402.1 61811..62806(+) (ruvB) [Streptococcus mutans LJ23]
MTRILDNELMGDEEFAERTLRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEMTITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DKITDKALTMLDVDHEGLDYVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATAK
AYEHLGYRYTE

Nucleotide

• Length: 996 bp

>NTDB_id=42640 SMULJ23_RS00365 WP_002263402.1 61811..62806(+) (ruvB) [Streptococcus mutans LJ23]
ATGACTAGAATTTTAGATAACGAACTTATGGGTGATGAGGAATTTGCAGAACGCACACTTCGTCCGCAGTATTTACAGGA
ATATATTGGTCAGGATAAGGTTAAAGACCAGCTGAAGATCTTCATCAAAGCAGCTAAACAACGTGATGAGGCTTTGGATC
ATGTCCTTTTATTTGGTCCTCCCGGCCTTGGTAAGACCACCATGGCTTTTGTTATTGCCAATGAATTGGGGGTTAATCTT
AAGCAAACCAGCGGTCCAGCTATTGAAAAAGCTGGTGATTTGGTTGCTGTTTTAAATGATTTAGAGCCTGGGGATGTTCT
TTTTATTGATGAAATTCATCGGCTGCCTATGGCTGTTGAGGAAGTTCTTTATAGTGCCATGGAAGATTTTTATATTGACA
TTATGATTGGTGCGGGAGAAACTTCTCGCAGCGTGCATTTGGATTTGCCGCCTTTTACTTTAATTGGGGCGACAACACGG
GCAGGTATGTTGTCAAATCCTTTGCGGGCGCGTTTTGGGATTACAGGTCATATGGAATATTATACAGATATTGATTTAAC
TGAAATTGTTGAGCGAACAGCGGATATTTTTGAGATGACCATTACCCATCAAGCTGCGTTAGAATTAGCACGGCGTTCCC
GTGGGACTCCGCGTATTGCTAACCGACTCTTAAAACGTGTTCGAGATTATGCCCAAATTATGGGAGATGGTCTTATTGAT
GATAAAATAACAGATAAAGCTTTGACCATGCTTGATGTTGATCATGAAGGCCTTGATTATGTTGATCAGAAGATCCTTAA
GACGATGATTGAGATGTACCATGGCGGGCCTGTTGGTCTGGGGACTCTGTCAGTTAATATTGCCGAGGAACGTGAGACCG
TTGAAGACATGTATGAGCCCTATCTTATTCAAAAGGGATTTATCATACGGACTCGCAGTGGACGTGTAGCCACTGCCAAA
GCTTATGAACATTTGGGTTATCGTTACACAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	91.239	100	0.912
ruvB	Streptococcus pneumoniae R6	90.937	100	0.909
ruvB	Streptococcus pneumoniae D39	90.937	100	0.909
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.991	97.583	0.595
ruvB	Helicobacter pylori 26695	50.464	97.583	0.492
ruvB	Synechocystis sp. PCC 6803	50.479	94.562	0.477