Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TEH_RS00115 Genome accession   NC_016052
Coordinates   24224..25594 (+) Length   456 a.a.
NCBI ID   WP_014123419.1    Uniprot ID   -
Organism   Tetragenococcus halophilus NBRC 12172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19224..30594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEH_RS00090 (TEH_00165) - 19926..20123 (-) 198 WP_014123414.1 hypothetical protein -
  TEH_RS00095 (TEH_00170) - 20304..21551 (-) 1248 WP_014123415.1 glutamate-5-semialdehyde dehydrogenase -
  TEH_RS00100 (TEH_00180) proB 21548..22354 (-) 807 WP_014123416.1 glutamate 5-kinase -
  TEH_RS00105 (TEH_00190) - 22605..23504 (-) 900 WP_014123417.1 aldo/keto reductase -
  TEH_RS00110 (TEH_00200) - 23700..24200 (+) 501 WP_014123418.1 hypothetical protein -
  TEH_RS00115 (TEH_00210) radA 24224..25594 (+) 1371 WP_014123419.1 DNA repair protein RadA Machinery gene
  TEH_RS00120 (TEH_00220) - 25619..26755 (+) 1137 WP_041591731.1 PIN/TRAM domain-containing protein -
  TEH_RS00125 (TEH_00230) gltX 26882..28339 (+) 1458 WP_014123421.1 glutamate--tRNA ligase -
  TEH_RS00130 (TEH_00240) cysS 28596..30005 (+) 1410 WP_014123422.1 cysteine--tRNA ligase -
  TEH_RS00135 (TEH_00250) - 30002..30391 (+) 390 WP_014123423.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50003.59 Da        Isoelectric Point: 7.0761

>NTDB_id=42640 TEH_RS00115 WP_014123419.1 24224..25594(+) (radA) [Tetragenococcus halophilus NBRC 12172]
MAKKVKTQFECQNCGYISPRYLGKCPNCGSWNSMVEEKLQDTTDRRNRTTLTGSKMQPTLLKDVVPKKEPRVKTSLDELN
RVLGGGVVPGSMILLGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRAQRLGDAENDFYLFAETGMQDIRE
TIEKLQPDYVIIDSIQTMTQPDISSVAGSVSQVRETTAELLKIAKSNEIAVFVVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKYQSFRILRAVKNRFGSTNEIGIFEMYEQGLKEVSNPSQVFLEERLEGTSGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTATGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTKPTECFIGEIGLTG
EIRRVSAIEQRVKEVQKLGFEKVYIPKNNLSGWKAPADIEVVGIATLDEALKRIFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=42640 TEH_RS00115 WP_014123419.1 24224..25594(+) (radA) [Tetragenococcus halophilus NBRC 12172]
ATGGCAAAAAAGGTAAAAACACAATTTGAATGTCAAAATTGCGGTTATATTTCACCTAGGTATCTAGGCAAATGTCCTAA
TTGTGGTAGTTGGAATTCGATGGTAGAAGAAAAACTACAAGACACTACCGATCGCAGGAATCGAACAACACTGACAGGTA
GCAAGATGCAGCCGACACTTTTAAAAGATGTTGTTCCTAAAAAAGAGCCACGAGTAAAGACATCTCTAGATGAATTAAAC
CGTGTCTTAGGTGGAGGTGTGGTTCCAGGATCGATGATTCTATTAGGCGGGGATCCTGGTATTGGTAAGTCCACCTTGCT
TTTACAAGTATCGCAACAGTTAGCAGCAACCGGTGGAACAGTACTTTATGTCTCCGGAGAAGAAAGTGCAGAACAAATCA
AATTACGAGCTCAGCGGTTAGGCGATGCCGAAAATGATTTTTATTTATTTGCTGAAACGGGTATGCAAGATATTCGAGAA
ACAATTGAAAAGCTGCAACCTGATTATGTGATCATTGACTCCATCCAAACGATGACACAACCAGATATATCAAGCGTGGC
CGGAAGTGTTAGTCAAGTTCGAGAAACTACGGCCGAGTTATTAAAAATTGCTAAATCAAACGAAATTGCCGTCTTTGTGG
TTGGCCATGTGACTAAAGAAGGTTCTATCGCTGGGCCTCGTATGCTAGAGCATATGGTGGATACGGTATTGTATTTTGAA
GGGGATAAGTACCAAAGCTTTCGTATTTTAAGGGCAGTAAAAAACCGTTTTGGTTCGACCAATGAGATCGGCATTTTTGA
AATGTATGAACAAGGCCTCAAAGAAGTAAGTAATCCTTCACAGGTTTTTTTAGAAGAACGATTAGAAGGAACTAGCGGAT
CTGCCATTGTGGTTGCGATGGAAGGAACGCGTCCTATTCTAGTGGAAATACAAGCTTTAGTTACACCAACGATGTTTGGA
AATGCTAAACGAACGGCTACTGGCTTGGATTTTAATCGAGTTTCTTTGATTATGGCTGTATTAGAAAAACGGGCAGGTCT
ACTTTTACAAAACCAGGATGCTTATTTAAAAGCAGCTGGTGGTGTAAAATTAAATGAACCAGCGATCGATCTAGCTATAG
CTATTAGTATTGCTTCAAGTTATAAAGAAAAAGGCACAAAACCTACTGAATGTTTCATTGGAGAAATTGGTCTTACAGGG
GAAATTCGTCGCGTGAGTGCTATTGAGCAGCGCGTAAAAGAGGTTCAAAAATTAGGTTTTGAGAAAGTATATATACCAAA
AAATAATTTAAGCGGCTGGAAAGCGCCAGCTGACATCGAGGTTGTTGGTATAGCAACACTTGATGAAGCATTAAAACGTA
TATTTAGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

70.33

99.781

0.702
  radA Streptococcus mitis NCTC 12261

70.33

99.781

0.702
  radA Streptococcus pneumoniae Rx1

70.33

99.781

0.702
  radA Streptococcus pneumoniae D39

70.33

99.781

0.702
  radA Streptococcus pneumoniae R6

70.33

99.781

0.702
  radA Streptococcus pneumoniae TIGR4

70.33

99.781

0.702
  radA Bacillus subtilis subsp. subtilis str. 168

63.858

98.904

0.632

Multiple sequence alignment