Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   IF745_RS13385 Genome accession   NZ_CP062338
Coordinates   2721400..2722113 (-) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain NAS_NP_103     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2716400..2727113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF745_RS13355 (IF745_13300) sph 2716965..2717789 (-) 825 Protein_2592 sphingomyelin phosphodiesterase -
  IF745_RS13360 (IF745_13305) - 2717845..2718882 (-) 1038 WP_000857198.1 site-specific integrase -
  IF745_RS13365 (IF745_13310) - 2719055..2719594 (-) 540 WP_000391618.1 type II toxin-antitoxin system PemK/MazF family toxin -
  IF745_RS13370 (IF745_13315) - 2719734..2719901 (-) 168 WP_031806878.1 hypothetical protein -
  IF745_RS13375 (IF745_13320) - 2720105..2720446 (-) 342 WP_000591749.1 hypothetical protein -
  IF745_RS13380 (IF745_13325) - 2720452..2721384 (-) 933 WP_000759682.1 exonuclease domain-containing protein -
  IF745_RS13385 (IF745_13330) irvR 2721400..2722113 (-) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  IF745_RS13390 (IF745_13335) - 2722076..2722249 (+) 174 WP_001801500.1 hypothetical protein -
  IF745_RS13395 (IF745_13340) - 2722246..2722509 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  IF745_RS13400 (IF745_13345) - 2722525..2722740 (+) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  IF745_RS13405 (IF745_13350) - 2722729..2723058 (-) 330 WP_240029494.1 hypothetical protein -
  IF745_RS13410 (IF745_13355) - 2723109..2723861 (+) 753 WP_001148641.1 phage antirepressor KilAC domain-containing protein -
  IF745_RS13415 (IF745_13360) - 2723877..2724074 (+) 198 WP_001148861.1 hypothetical protein -
  IF745_RS13420 (IF745_13365) - 2724105..2724245 (+) 141 WP_000939496.1 hypothetical protein -
  IF745_RS13425 (IF745_13370) - 2724260..2724892 (-) 633 WP_000275058.1 hypothetical protein -
  IF745_RS13430 (IF745_13375) - 2724951..2725271 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  IF745_RS13435 (IF745_13380) - 2725268..2725429 (+) 162 WP_240029495.1 DUF1270 domain-containing protein -
  IF745_RS13440 (IF745_13385) - 2725521..2725781 (+) 261 WP_000291089.1 DUF1108 family protein -
  IF745_RS13445 (IF745_13390) - 2725796..2726275 (+) 480 WP_000002516.1 siphovirus Gp157 family protein -
  IF745_RS13450 (IF745_13395) - 2726275..2727048 (+) 774 WP_240029496.1 AAA family ATPase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=426378 IF745_RS13385 WP_001031454.1 2721400..2722113(-) (irvR) [Staphylococcus aureus strain NAS_NP_103]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=426378 IF745_RS13385 WP_001031454.1 2721400..2722113(-) (irvR) [Staphylococcus aureus strain NAS_NP_103]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401