Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SMULJ23_RS00205 Genome accession   NC_017768
Coordinates   28742..29497 (+) Length   251 a.a.
NCBI ID   WP_002263137.1    Uniprot ID   Q8DWM0
Organism   Streptococcus mutans LJ23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23742..34497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS00185 (SMULJ23_0017) mreD 24484..24990 (+) 507 WP_002263141.1 rod shape-determining protein MreD -
  SMULJ23_RS00190 (SMULJ23_0018) - 25100..26395 (+) 1296 WP_002263140.1 CHAP domain-containing protein -
  SMULJ23_RS00195 (SMULJ23_0019) - 26520..27488 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  SMULJ23_RS00200 (SMULJ23_0020) - 27577..28752 (+) 1176 WP_014677662.1 pyridoxal phosphate-dependent aminotransferase -
  SMULJ23_RS00205 (SMULJ23_0021) recO 28742..29497 (+) 756 WP_002263137.1 DNA repair protein RecO Machinery gene
  SMULJ23_RS00210 (SMULJ23_0022) plsX 29705..30703 (+) 999 WP_002264116.1 phosphate acyltransferase PlsX -
  SMULJ23_RS00215 (SMULJ23_0023) - 30705..30953 (+) 249 WP_002263135.1 acyl carrier protein -
  SMULJ23_RS00220 (SMULJ23_0024) comA 31180..31761 (+) 582 WP_002273395.1 ATP-binding cassette domain-containing protein Regulator
  SMULJ23_RS00225 (SMULJ23_0025) purC 31883..32590 (+) 708 WP_002274471.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29353.88 Da        Isoelectric Point: 6.6577

>NTDB_id=42637 SMULJ23_RS00205 WP_002263137.1 28742..29497(+) (recO) [Streptococcus mutans LJ23]
MQTKETRGLVLYNRPFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=42637 SMULJ23_RS00205 WP_002263137.1 28742..29497(+) (recO) [Streptococcus mutans LJ23]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCCATTTAGAGAGGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTAATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTCGATTATGAAATTTTGACCAATA
TTTTTGAAATTCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653

Multiple sequence alignment