Detailed information NTG0426287

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FE795_RS13720
• Genome accession: NZ_CP049362
• Coordinates: 2981477..2982526 (-)
• Length: 349 a.a.
• NCBI ID: WP_039943507.1
• Uniprot ID: -
• Organism: Alcaligenes ammonioxydans strain HO-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2976477..2987526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FE795_RS13695 (FE795_13735)	nusB	2976579..2977094 (-)	516	WP_051010438.1	transcription antitermination factor NusB	-
FE795_RS13700 (FE795_13740)	ribH	2977048..2977566 (-)	519	WP_003802371.1	6,7-dimethyl-8-ribityllumazine synthase	-
FE795_RS13705 (FE795_13745)	ribBA	2977581..2978747 (-)	1167	WP_003802373.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
FE795_RS13710 (FE795_13750)	-	2978863..2979690 (+)	828	WP_003802374.1	IclR family transcriptional regulator	-
FE795_RS13715 (FE795_13755)	-	2979811..2981340 (+)	1530	WP_059318300.1	CYTH and CHAD domain-containing protein	-
FE795_RS13720 (FE795_13760)	pilA	2981477..2982526 (-)	1050	WP_039943507.1	signal recognition particle-docking protein FtsY	Machinery gene
FE795_RS13725 (FE795_13765)	rsmD	2982975..2983604 (+)	630	WP_003802377.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FE795_RS13730 (FE795_13770)	coaD	2983625..2984131 (+)	507	WP_003802378.1	pantetheine-phosphate adenylyltransferase	-
FE795_RS13735 (FE795_13775)	-	2984217..2984474 (+)	258	WP_003802379.1	YfhL family 4Fe-4S dicluster ferredoxin	-
FE795_RS13740 (FE795_13780)	-	2984543..2984941 (-)	399	WP_059318299.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 349 a.a.
• Molecular weight: 36592.20 Da
• Isoelectric Point: 5.4706

>NTDB_id=426287 FE795_RS13720 WP_039943507.1 2981477..2982526(-) (pilA) [Alcaligenes ammonioxydans strain HO-1]
MQPIPEPEPKPEPEPEIAPVPAPAPAPQPEPAPTPEPEAAAPVVKTSWMSRLKQGLSRTGQSLSSLFVGAKVDETLFEEL
EDALLMADAGVEATEKLITALRARVRKEKVSDAAQVKQILCDILTDHLKPLEKSFPLGSGKPLVVMIAGVNGAGKTTSIG
KLAHTFQEQGAKVLLAAGDTFRAAAREQLIEWGARNNVSVIAQDGGDPAAVAFDAVHAGRARDMGVVMVDTAGRLPTQLH
LMEELKKIKRVIGKADGQAPHEILLVVDGNTGQNAISQIRAFDAALGLTGLVVTKLDGTAKGGTLAAVAACAQGVRPIPV
YWIGVGEGMQDLQAFVAREFASALLGMNA

Nucleotide

• Length: 1050 bp

>NTDB_id=426287 FE795_RS13720 WP_039943507.1 2981477..2982526(-) (pilA) [Alcaligenes ammonioxydans strain HO-1]
GTGCAACCGATCCCTGAACCGGAGCCAAAGCCAGAACCAGAGCCAGAGATTGCTCCTGTTCCCGCACCGGCCCCCGCGCC
ACAGCCTGAACCAGCTCCGACCCCAGAACCAGAAGCCGCCGCCCCTGTGGTGAAAACCTCCTGGATGTCCCGGTTGAAAC
AGGGCTTGTCGCGCACCGGTCAAAGTCTGAGCAGTCTGTTTGTCGGTGCCAAGGTTGATGAAACCTTGTTTGAGGAGCTG
GAAGATGCCTTATTGATGGCCGATGCCGGCGTGGAGGCAACGGAAAAGCTGATTACCGCCTTGCGTGCGCGTGTACGCAA
GGAAAAAGTCAGCGATGCAGCCCAGGTCAAGCAAATTCTGTGTGACATCCTGACCGATCATTTGAAGCCCTTGGAGAAGT
CCTTTCCACTCGGTTCGGGCAAACCCCTGGTGGTCATGATTGCCGGTGTTAACGGTGCGGGTAAAACCACGTCCATTGGC
AAGCTGGCGCACACCTTTCAGGAGCAGGGCGCAAAAGTCCTGCTGGCGGCGGGCGATACCTTTCGTGCGGCGGCGCGTGA
GCAACTGATTGAATGGGGGGCGCGCAATAACGTCAGTGTGATTGCCCAGGACGGGGGAGATCCCGCCGCCGTGGCGTTTG
ATGCGGTACACGCGGGCCGTGCCCGAGATATGGGGGTGGTCATGGTGGATACCGCGGGCCGCTTGCCGACTCAACTGCAC
CTGATGGAAGAGCTCAAAAAGATCAAGCGCGTCATCGGCAAGGCGGACGGCCAGGCGCCACACGAAATACTCCTGGTTGT
GGACGGCAATACCGGACAGAATGCGATCTCCCAGATTCGTGCCTTTGATGCCGCCTTGGGTCTGACGGGTCTGGTGGTCA
CCAAGCTGGACGGCACGGCCAAAGGCGGGACGCTGGCGGCGGTTGCCGCCTGTGCTCAGGGCGTTCGACCCATTCCCGTG
TACTGGATCGGGGTGGGCGAGGGTATGCAGGATCTGCAAGCGTTTGTGGCGCGCGAGTTTGCTTCGGCCTTGCTGGGTAT
GAACGCCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (143-346)

• SRP54-type protein, helical bundle domain (SRP54_N) (60-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.824	87.679	0.516