Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   G6R31_RS11220 Genome accession   NZ_CP049357
Coordinates   2313152..2313712 (-) Length   186 a.a.
NCBI ID   WP_017870768.1    Uniprot ID   A0AAV4K8F7
Organism   Deinococcus wulumuqiensis R12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2308152..2318712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6R31_RS11205 (G6R31_11205) - 2310119..2310604 (-) 486 WP_017870766.1 hypothetical protein -
  G6R31_RS11215 (G6R31_11215) - 2311004..2312917 (+) 1914 WP_017870767.1 peptidylprolyl isomerase -
  G6R31_RS11220 (G6R31_11220) ddrB 2313152..2313712 (-) 561 WP_017870768.1 single-stranded DNA-binding protein DdrB Machinery gene
  G6R31_RS11225 (G6R31_11225) - 2313812..2314186 (-) 375 WP_017870769.1 hypothetical protein -
  G6R31_RS11230 (G6R31_11230) - 2314255..2314623 (-) 369 WP_017870770.1 hypothetical protein -
  G6R31_RS11235 (G6R31_11235) - 2314620..2315525 (-) 906 WP_017870771.1 hypothetical protein -
  G6R31_RS11240 (G6R31_11240) - 2315565..2316356 (+) 792 WP_017870772.1 APH(3') family aminoglycoside O-phosphotransferase -
  G6R31_RS11245 (G6R31_11245) - 2316461..2317267 (-) 807 WP_152423658.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20747.23 Da        Isoelectric Point: 9.2754

>NTDB_id=426276 G6R31_RS11220 WP_017870768.1 2313152..2313712(-) (ddrB) [Deinococcus wulumuqiensis R12]
MLQIEFLTDLGARVTVSVEHESRLLDVQRHYGRLGWTSGEIPSGGYQFPIENEPDFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPQHVREKADGDIEYVSLAIFRGGKRQERYAVPGGAAASQGRPAPQGQPT
QTRPQAARPASRPPAQQPAQEEEAPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=426276 G6R31_RS11220 WP_017870768.1 2313152..2313712(-) (ddrB) [Deinococcus wulumuqiensis R12]
ATGTTGCAGATTGAATTTCTGACCGACCTGGGTGCGCGGGTCACGGTGAGCGTGGAGCACGAGAGTCGGCTGCTGGACGT
GCAACGTCACTATGGTCGCCTGGGATGGACCAGCGGCGAGATTCCGTCCGGGGGCTACCAGTTTCCCATCGAAAACGAGC
CGGACTTCGACTGGTCGCTGATCGGTGCCCGCAAGTGGAAAAGCCCGGAAGGCGAGGAACTCGTCATTCACCGGGGCCAC
GCCTACCGCCGCCGCGAACTGGAGGCGGTGGACAGCCGCAAACTCAAGCTTCCTGCCGCCATCAAATACAGCCGGGGCGC
CAAGGTCAGCGACCCGCAGCACGTCCGCGAGAAGGCCGACGGCGACATCGAATATGTCAGCCTCGCCATTTTCCGGGGCG
GCAAGCGCCAGGAGCGCTACGCGGTGCCCGGCGGCGCGGCGGCCAGTCAGGGACGCCCGGCTCCGCAGGGCCAGCCCACT
CAAACCCGGCCCCAGGCGGCCCGTCCCGCCTCCCGGCCCCCCGCTCAGCAGCCTGCACAGGAAGAAGAAGCGCCGTTCTG
A

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

88.83

100

0.898