Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   G6R31_RS06000 Genome accession   NZ_CP049357
Coordinates   1212195..1212656 (+) Length   153 a.a.
NCBI ID   WP_017871132.1    Uniprot ID   A0AAV4K4W6
Organism   Deinococcus wulumuqiensis R12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1207195..1217656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6R31_RS05990 (G6R31_05990) - 1208975..1209727 (-) 753 WP_026138768.1 DUF4388 domain-containing protein -
  G6R31_RS05995 (G6R31_05995) - 1209937..1212195 (+) 2259 WP_017871131.1 hypothetical protein -
  G6R31_RS06000 (G6R31_06000) pilV 1212195..1212656 (+) 462 WP_017871132.1 type II secretion system protein Machinery gene
  G6R31_RS06005 (G6R31_06005) - 1212660..1213232 (+) 573 WP_229659259.1 type II secretion system protein -
  G6R31_RS06010 (G6R31_06010) - 1213229..1214116 (+) 888 WP_025567400.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  G6R31_RS06015 (G6R31_06015) - 1214206..1215903 (+) 1698 WP_017871134.1 dynamin family protein -
  G6R31_RS06020 (G6R31_06020) - 1215990..1216907 (+) 918 WP_114671626.1 cation diffusion facilitator family transporter -
  G6R31_RS06025 (G6R31_06025) - 1216950..1217654 (-) 705 WP_017871136.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16279.02 Da        Isoelectric Point: 9.9629

>NTDB_id=426268 G6R31_RS06000 WP_017871132.1 1212195..1212656(+) (pilV) [Deinococcus wulumuqiensis R12]
MRWHQGGLTLIELLVVLAIIGILMGIFGWNMIRSIRAAELREAAAQVAVDLRQARSLAQRSSSDIVLVLPGSAGANTYKV
DTNVKSIPYGVRLICRSNCGTSTTTNVTYQAPYGELGAIGSIYIVRSPMSGIGDYEIRIVGVTGKIILAKAGG

Nucleotide


Download         Length: 462 bp        

>NTDB_id=426268 G6R31_RS06000 WP_017871132.1 1212195..1212656(+) (pilV) [Deinococcus wulumuqiensis R12]
ATGAGGTGGCACCAAGGGGGACTTACCCTTATCGAACTGCTCGTGGTACTGGCGATCATCGGCATTCTGATGGGCATTTT
TGGGTGGAATATGATACGCAGCATCAGAGCCGCCGAACTGCGGGAAGCGGCAGCCCAGGTGGCTGTAGATCTGCGTCAGG
CGCGTTCGCTGGCGCAACGCAGCAGCAGCGACATCGTTCTCGTGCTTCCAGGAAGCGCAGGGGCAAACACTTACAAGGTG
GATACCAACGTCAAATCTATTCCTTATGGAGTGCGACTGATTTGTAGATCCAACTGCGGCACCAGCACGACAACGAACGT
GACTTATCAGGCACCATACGGCGAATTGGGTGCCATAGGTAGCATTTATATCGTCAGGAGCCCCATGAGTGGAATCGGTG
ACTATGAAATCAGAATTGTGGGCGTGACCGGCAAGATTATCCTTGCAAAAGCGGGGGGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

81.757

96.732

0.791